Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40091
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 134 TSTGIFQGSSSDVTRCLKARRLRLWNRGC 220
           T   +F G  SD+      + L +W  GC
Sbjct: 241 TLVTMFTGLKSDIPPVAYVKALDVWMAGC 269


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 260 YLLGAVMVRTPSDDS 216
           Y LGA ++RTP++ S
Sbjct: 141 YALGAKIIRTPTEAS 155


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 287 GAHRTDRSRSQGDQGPERGNP 349
           GA     S  Q  Q P+RG+P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSP 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,333
Number of Sequences: 438
Number of extensions: 2944
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)