Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40091
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    33   0.10 
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    33   0.10 
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    33   0.14 
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    32   0.18 
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro...    30   0.97 
At4g14830.1 68417.m02280 expressed protein                             29   1.7  
At4g19930.1 68417.m02920 F-box family protein similar to F-box p...    27   5.2  
At1g20816.1 68414.m02607 expressed protein                             27   5.2  
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ...    27   6.9  
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ...    27   6.9  
At2g22790.1 68415.m02703 expressed protein ; expression supporte...    27   9.1  

>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = +1

Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
           S +F+RR+ LPE A  E V++ +  +GVL++T P+
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVPK 141


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
           S QF RR+ LPE    + V++ +  +GVLT+T P+
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVPK 138


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
           S +F+RR+ LPE A  E V++ +  +GVLT+  P+
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVPK 144


>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 151 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 255
           S +F RR+ LPE A  E +++ +  +GVL++T P+
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVPK 142


>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
           protein (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family: identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 134

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 40  NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRL 219
           ++D+     EEI V+  D   ++               + F R++ LPE      + +  
Sbjct: 40  SVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIGISAGY 99

Query: 220 SSDGVLTITAPRRYPT 267
             DGVLT+  P+R  T
Sbjct: 100 E-DGVLTVIVPKRIMT 114


>At4g14830.1 68417.m02280 expressed protein
          Length = 152

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 163 VRRYALPEGAAPETVESRLSSDGVLTITAPR 255
           V R+ LPE   PE V      DG L +T P+
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVPK 139


>At4g19930.1 68417.m02920 F-box family protein similar to F-box
           protein family, AtFBX8 (GI:20197464) {Arabidopsis
           thaliana}; contains Pfam PF00646: F-box domain
          Length = 431

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
 Frame = +1

Query: 274 RERERCPSHRPVPFAXXXXXXXXXXXMP-----KISRVVLQWCILICSKVLS 414
           R R+ C SH P+P+            +P     +   V   W  LICS+  +
Sbjct: 29  RRRDMCKSHEPMPYIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLICSRTFT 80


>At1g20816.1 68414.m02607 expressed protein
          Length = 167

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 231 GSHHHRAEKVPDAVKGERKVPIAQTGPVRKEIKDQSEGTQD 353
           G H+ + EK+   V+G++K P+     V   IK + +  QD
Sbjct: 64  GLHYDKREKLRCLVRGKKKFPVITDEVVTFNIKGRCDFDQD 104


>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 626

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 302 LCDGHLSLSLDGVGYLLGAVMVRTP 228
           L DGH+  + +    L G +MVRTP
Sbjct: 566 LADGHIPWACEAFSRLHGPIMVRTP 590


>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 631

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 302 LCDGHLSLSLDGVGYLLGAVMVRTP 228
           L DGH+  + +    L G +MVRTP
Sbjct: 571 LADGHIPWACEAFSRLHGPIMVRTP 595


>At2g22790.1 68415.m02703 expressed protein ; expression supported
           by MPSS
          Length = 325

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 296 DGHLSLSLDGVGYLLGAVMVRTPSDDSR 213
           DG   LS D VG+L G     TP++D R
Sbjct: 170 DGVRELSCDVVGFLKGIGRSETPTEDRR 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,438,009
Number of Sequences: 28952
Number of extensions: 179203
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)