Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40090
(846 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 174 7e-44
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 174 7e-44
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 174 7e-44
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 174 7e-44
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 162 3e-40
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 162 3e-40
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 151 8e-37
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 90 2e-18
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 89 5e-18
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 88 6e-18
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 88 6e-18
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 87 1e-17
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 87 1e-17
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 86 2e-17
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 85 6e-17
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 85 6e-17
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 55 5e-08
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 55 7e-08
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 78/84 (92%), Positives = 83/84 (98%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYTIGKEIVDL LDRI
Sbjct: 99 AANNFARGHYTIGKEIVDLCLDRI 122
Score = 138 bits (334), Expect = 4e-33
Identities = 78/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQVST+VV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D + ++DNE ++ S +PT T + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVSILLDNE-AIYDICRRSLNIERPTYTNLNRLVSQVISSLTAS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQL 745
AL + + + NLVP PRIHF L +YAPV + +HEQL
Sbjct: 242 LRFDGALNVDVT-EFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQL 286
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT---NLVPYP 263
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +3
Query: 714 ISAEKATMNSFSVAEIPNACFEARPNQMVKCDPR 815
ISAEKA SVAEI N+ FE + M KCDPR
Sbjct: 276 ISAEKAFHEQLSVAEITNSAFEP-ASMMAKCDPR 308
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 174 bits (423), Expect = 7e-44
Identities = 78/84 (92%), Positives = 83/84 (98%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYTIGKEIVDL LDRI
Sbjct: 99 AANNFARGHYTIGKEIVDLCLDRI 122
Score = 138 bits (334), Expect = 4e-33
Identities = 78/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQVST+VV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D + ++DNE ++ S +PT T + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVSILLDNE-AIYDICRRSLNIERPTYTNLNRLVSQVISSLTAS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQL 745
AL + + + NLVP PRIHF L +YAPV + +HEQL
Sbjct: 242 LRFDGALNVDVT-EFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQL 286
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT---NLVPYP 263
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +3
Query: 714 ISAEKATMNSFSVAEIPNACFEARPNQMVKCDPR 815
ISAEKA SVAEI N+ FE + M KCDPR
Sbjct: 276 ISAEKAFHEQLSVAEITNSAFEP-ASMMAKCDPR 308
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 78/84 (92%), Positives = 83/84 (98%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYTIGKEIVDL LDRI
Sbjct: 99 AANNFARGHYTIGKEIVDLCLDRI 122
Score = 138 bits (335), Expect = 3e-33
Identities = 78/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQVST+VV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D + ++DNE ++ S +PT T + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVSILLDNE-AIYDICRRSLSIERPTYTNLNRLVSQVISSLTAS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQL 745
AL + + + NLVP PRIHF L +YAPV + +HEQL
Sbjct: 242 LRFDGALNVDVT-EFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQL 286
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT---NLVPYP 263
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +3
Query: 714 ISAEKATMNSFSVAEIPNACFEARPNQMVKCDPR 815
ISAEKA SVAEI N+ FE + M KCDPR
Sbjct: 276 ISAEKAFHEQLSVAEITNSAFEP-ASMMAKCDPR 308
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 78/84 (92%), Positives = 83/84 (98%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYTIGKEIVDL LDRI
Sbjct: 99 AANNFARGHYTIGKEIVDLCLDRI 122
Score = 138 bits (335), Expect = 3e-33
Identities = 78/166 (46%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQVST+VV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D + ++DNE ++ S +PT T + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVSILLDNE-AIYDICRRSLSIERPTYTNLNRLVSQVISSLTAS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQL 745
AL + + + NLVP PRIHF L +YAPV + +HEQL
Sbjct: 242 LRFDGALNVDVT-EFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQL 286
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT---NLVPYP 263
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +3
Query: 714 ISAEKATMNSFSVAEIPNACFEARPNQMVKCDPR 815
ISAEKA SVAEI N+ FE + M KCDPR
Sbjct: 276 ISAEKAFHEQLSVAEITNSAFEP-ASMMAKCDPR 308
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 162 bits (393), Expect = 3e-40
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYT+GKEIVDL LDR+
Sbjct: 99 AANNFARGHYTVGKEIVDLCLDRV 122
Score = 140 bits (339), Expect = 1e-33
Identities = 81/166 (48%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQVSTAVV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D A ++DNE ++ S +PT T + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRRSLDIERPTYTNLNRLISQIISSLTTS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQL 745
A+ + + NLVP PRIHF L +YAPV + YHEQL
Sbjct: 242 LRFDGAINV-DITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQL 286
Score = 98.3 bits (234), Expect = 6e-21
Identities = 46/58 (79%), Positives = 51/58 (87%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQT---NLVPYP 263
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 162 bits (393), Expect = 3e-40
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYT+GKEIVDL LDR+
Sbjct: 99 AANNFARGHYTVGKEIVDLCLDRV 122
Score = 140 bits (339), Expect = 1e-33
Identities = 81/166 (48%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQVSTAVV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D A ++DNE ++ S +PT T + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRRSLDIERPTYTNLNRLISQIISSLTTS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQL 745
A+ + + NLVP PRIHF L +YAPV + YHEQL
Sbjct: 242 LRFDGAINV-DITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQL 286
Score = 98.3 bits (234), Expect = 6e-21
Identities = 46/58 (79%), Positives = 51/58 (87%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQT---NLVPYP 263
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 151 bits (365), Expect = 8e-37
Identities = 65/84 (77%), Positives = 77/84 (91%)
Frame = +3
Query: 3 DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 182
D T+G D+FNTFFSET +G+HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKED
Sbjct: 39 DSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 183 AANNYARGHYTIGKEIVDLVLDRI 254
AANN+ARGHYT+G+EIVD L+R+
Sbjct: 99 AANNFARGHYTVGREIVDTCLERL 122
Score = 133 bits (322), Expect = 1e-31
Identities = 77/165 (46%), Positives = 99/165 (60%), Gaps = 2/165 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RKLAD CTGLQGFL+F+ LL+ERLSVD+GKKSKL F IYP+PQVSTAVV
Sbjct: 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVV 182
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*I--VXXXXXXXXXXX 607
EPYNS+L+TH+ LEH+D ++DNE ++ S +PT + + +
Sbjct: 183 EPYNSVLSTHSLLEHTDVVVLLDNE-AIYDICRRSLDIERPTYSNLNRLISQTISSLTTS 241
Query: 608 XXXXTAL*MWTSPSSRLNLVP*PRIHFPLVTYAPVHLCREGYHEQ 742
A+ + + NLVP PRIHF L +YAPV + YHEQ
Sbjct: 242 LRFDGAINV-DITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQ 285
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
IYDICRR+LDIERPTY+NLNRLI Q +SS+T SLRFDGA+NVD+TEFQT L PYP
Sbjct: 209 IYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQT---NLVPYP 263
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 714 ISAEKATMNSFSVAEIPNACFEARPNQMVKCDPR 815
IS+ KA FSV EI + FE N M KCDPR
Sbjct: 276 ISSAKAYHEQFSVPEITTSVFEPS-NMMAKCDPR 308
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 89.8 bits (213), Expect = 2e-18
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +3
Query: 36 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 215
N +++E G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 216 IGKEIVDLVLD 248
G E++D VLD
Sbjct: 108 EGAELIDAVLD 118
Score = 69.3 bits (162), Expect = 3e-12
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+VS VV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC--FRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 88.6 bits (210), Expect = 5e-18
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = +3
Query: 27 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 206
+ N +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+G
Sbjct: 46 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 105
Query: 207 HYTIGKEIVDLVLD 248
HYT G E++D VLD
Sbjct: 106 HYTEGAELIDAVLD 119
Score = 69.7 bits (163), Expect = 2e-12
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+VS VV
Sbjct: 122 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 181
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 182 EPYNATLSVHQLVENADECMVLDNEALYD--ICFRTLKLSTPSFGDLNHLISATMSGVTC 239
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 240 SLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 274
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T SLRF G LN DL + L P+P
Sbjct: 208 LYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAV---NLIPFP 262
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 88.2 bits (209), Expect = 6e-18
Identities = 35/74 (47%), Positives = 52/74 (70%)
Frame = +3
Query: 27 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 206
+ N +F+E GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 45 ERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
Query: 207 HYTIGKEIVDLVLD 248
HYT G E++D VLD
Sbjct: 105 HYTEGAELIDSVLD 118
Score = 69.7 bits (163), Expect = 2e-12
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + + F+++P+P+VS VV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE ++ + A PT +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNE-ALYDICFRTLKLANPTFGDLNHLISATMSGVTCC 239
Query: 614 XXTAL*MWTS-PSSRLNLVP*PRIHFPLVTYAPV 712
+ + +NL+P PR+HF +V +AP+
Sbjct: 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + PT+ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 88.2 bits (209), Expect = 6e-18
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +3
Query: 36 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 215
N +++E G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 216 IGKEIVDLVLD 248
G E++D VLD
Sbjct: 108 EGAELIDSVLD 118
Score = 68.9 bits (161), Expect = 4e-12
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + + F+++P+P+VS VV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYD--ICFRTLKLSTPSFGDLNHLISATMSGVTC 238
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 87.0 bits (206), Expect = 1e-17
Identities = 35/71 (49%), Positives = 50/71 (70%)
Frame = +3
Query: 36 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT 215
N +++E G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 216 IGKEIVDLVLD 248
G E++D VLD
Sbjct: 108 EGAELIDSVLD 118
Score = 69.3 bits (162), Expect = 3e-12
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+VS VV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC--FRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 87.0 bits (206), Expect = 1e-17
Identities = 33/74 (44%), Positives = 52/74 (70%)
Frame = +3
Query: 27 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 206
+ N +++E G++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 46 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKG 105
Query: 207 HYTIGKEIVDLVLD 248
HYT G E++D VLD
Sbjct: 106 HYTEGAELIDAVLD 119
Score = 69.7 bits (163), Expect = 2e-12
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+VS VV
Sbjct: 122 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 181
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 182 EPYNATLSVHQLVENADECMVLDNEALYD--ICFRTLKLSTPSFGDLNHLISATMSGVTC 239
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 240 SLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 274
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T SLRF G LN DL + L P+P
Sbjct: 208 LYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAV---NLIPFP 262
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 86.2 bits (204), Expect = 2e-17
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = +3
Query: 27 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 206
+ + +F+E GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 45 ERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
Query: 207 HYTIGKEIVDLVLD 248
HYT G E++D VLD
Sbjct: 105 HYTEGAELIDSVLD 118
Score = 65.7 bits (153), Expect = 4e-11
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ LQGF + H LL+ ++ +Y + + F+++P+P+VS VV
Sbjct: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE ++ + A PT +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNE-ALYDICFRTLKLANPTFGDLNHLISATMSGVTCC 239
Query: 614 XXTAL*MWTS-PSSRLNLVP*PRIHFPLVTYAPV 712
+ + +NL+P PR+HF +V +AP+
Sbjct: 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + PT+ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 85.0 bits (201), Expect = 6e-17
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = +3
Query: 27 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 206
+ N +++E G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+G
Sbjct: 45 ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKG 104
Query: 207 HYTIGKEIVDLVLD 248
HYT G E++D VLD
Sbjct: 105 HYTEGAELIDSVLD 118
Score = 69.3 bits (162), Expect = 3e-12
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+VS VV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC--FRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 85.0 bits (201), Expect = 6e-17
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = +3
Query: 27 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 206
+ N +++E G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+G
Sbjct: 45 ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKG 104
Query: 207 HYTIGKEIVDLVLD 248
HYT G E++D VLD
Sbjct: 105 HYTEGAELIDSVLD 118
Score = 69.3 bits (162), Expect = 3e-12
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Frame = +2
Query: 254 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 433
RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+VS VV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 434 EPYNSILTTHTTLEHSDCAFMVDNEPSMTSAAVISTLSAQPTPT*IVXXXXXXXXXXXXX 613
EPYN+ L+ H +E++D ++DNE TL +
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC--FRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 614 XXTAL*MWTSPSSRL--NLVP*PRIHFPLVTYAPV 712
S +L NL+P PR+HF +V +AP+
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 511 IYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
+YDIC R L + P++ +LN LI +S +T LRF G LN DL + L P+P
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAV---NLIPFP 261
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +3
Query: 21 GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANN 194
G D + FF + ++PRA+ +DLEP V++ ++ G YR L++ E + A NN
Sbjct: 44 GGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNN 103
Query: 195 YARGHYTIGKEIVDLVLDRI 254
+A G++ GK + + ++D I
Sbjct: 104 WASGYHQ-GKGVEEEIMDMI 122
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 263 ADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP-QVSTAVVEP 439
AD L+GF++ H L+E L+ Y KK ++++P + S VV+P
Sbjct: 126 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQP 185
Query: 440 YNSILTTHTTLEHSDCAFMVDN 505
YNS+LT ++DC ++DN
Sbjct: 186 YNSLLTLKRLTLNADCVVVLDN 207
Score = 34.7 bits (76), Expect = 0.078
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 520 ICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
I L + PT+ N L+ ++S+ T +LR+ G +N DL L +L P P
Sbjct: 213 IAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGL---LASLIPTP 264
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +3
Query: 21 GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANN 194
G D + FF + ++PRA+ +DLEP V++ ++ G YR L++ E + A NN
Sbjct: 44 GGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNN 103
Query: 195 YARGHYTIGKEIVDLVLDRI 254
+A G++ GK + + ++D I
Sbjct: 104 WASGYHQ-GKGVEEEIMDMI 122
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 263 ADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEP 439
AD L+GF++ H L+E L+ Y KK ++++P + S VV+P
Sbjct: 126 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQP 185
Query: 440 YNSILTTHTTLEHSDCAFMVDN 505
YNS+LT ++DC ++DN
Sbjct: 186 YNSLLTLKRLTLNADCVVVLDN 207
Score = 34.7 bits (76), Expect = 0.078
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 520 ICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT*LGALTPYP 684
I L + PT+ N L+ ++S+ T +LR+ G +N DL L +L P P
Sbjct: 213 IAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGL---LASLIPTP 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,216,997
Number of Sequences: 28952
Number of extensions: 414231
Number of successful extensions: 1241
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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