Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40088
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   7.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   9.7  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   9.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 207 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 106
           LSS  H    PS R +    R   +Y    + SW
Sbjct: 286 LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 190 YSSDTKCTHSGKSSTVALFLPKSKIRILGS 101
           Y+ D  CTH      +++  P+S    +GS
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 182 GHQVHAQWKVVN 147
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 189 IRRTPSARTVESRQRSLSSYP 127
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 447 GGRHRSSRLCAVPSSSSP 500
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 447 GGRHRSSRLCAVPSSSSP 500
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 447 GGRHRSSRLCAVPSSSSP 500
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 447 GGRHRSSRLCAVPSSSSP 500
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 189 IRRTPSARTVESRQRSLSSYP 127
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 561 KLITFILCEPP 529
           KL+TFIL  PP
Sbjct: 50  KLVTFILKNPP 60


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 186 EYEQLSSEALEAGRICCNKYLVKTAERI 269
           E ++   +AL +G   CN+   +TAE++
Sbjct: 61  ELKKTLPDALSSGCTKCNQKQKETAEKV 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,018
Number of Sequences: 336
Number of extensions: 4071
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)