Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40088
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 147 2e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 147 2e-36
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 2.0
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 27 2.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.9
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 147 bits (356), Expect = 2e-36
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSEALEAGRICCNKYLVK 254
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
Score = 139 bits (336), Expect = 4e-34
Identities = 64/92 (69%), Positives = 73/92 (79%)
Frame = +2
Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 439
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 440 SDRWKAQVIEALRRAKFKFPGRQRSTYQKSGG 535
D +A IEALRR ++KFPG+QR K G
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 481 CQVQVPRTSKIYVSKKWGFTKYERDEFEKLREEG 582
CQ + P +I VSKKWGF++Y RDE+ + R G
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRG 188
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 147 bits (356), Expect = 2e-36
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSEALEAGRICCNKYLVK 254
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
Score = 138 bits (335), Expect = 5e-34
Identities = 64/92 (69%), Positives = 73/92 (79%)
Frame = +2
Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 439
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 440 SDRWKAQVIEALRRAKFKFPGRQRSTYQKSGG 535
D +A IEALRR ++KFPG+QR K G
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 481 CQVQVPRTSKIYVSKKWGFTKYERDEFEKLREEG 582
CQ + P +I VSKKWGF++Y RDE+ + R G
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRG 188
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 45 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 222 G 224
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 221
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 541 KYERDEFEKLREEGRSL*PAALCSNAPNMDLSKL 642
K +RD E++ +EG+++ + PNMDLSK+
Sbjct: 15 KQDRDA-EEIEDEGKNIILGIVSQLRPNMDLSKV 47
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 228 ICCNKYLVKTAERISSISA*DFTL 299
ICC KY V T R + I FTL
Sbjct: 9 ICCAKYFVNTKSRFNEILPPRFTL 32
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 136 RERPLTTFHCACTWCPTNMNS 198
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 394 STLRLAKRTTHPSLEPISSS 335
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 221 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 105
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 263 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 367
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 88 VGVYLIPRSVSSIWV 132
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 123 DLGKKRATVDDFPLCVHLVSDEYEQL 200
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,091
Number of Sequences: 5004
Number of extensions: 69109
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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