Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40088
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 141 4e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 139 2e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 139 2e-33
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 2.7
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.2
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 28 8.3
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 28 8.3
08_02_0567 + 18769742-18769790,18769928-18771351 28 8.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 141 bits (342), Expect = 4e-34
Identities = 65/95 (68%), Positives = 76/95 (80%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQKSGG 535
VR + EALRRAKFKFPGRQ+ + + G
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWG 172
Score = 136 bits (330), Expect = 1e-32
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKTA 260
SSEALEA RI CNKY+ K A
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGR 585
P KI S+KWGFTK+ R+E+ KL+ EGR
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGR 189
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 139 bits (337), Expect = 2e-33
Identities = 65/95 (68%), Positives = 73/95 (76%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQKSGG 535
VR EALRRAKFKFPGRQ+ + G
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWG 168
Score = 117 bits (281), Expect = 1e-26
Identities = 51/73 (69%), Positives = 60/73 (82%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKTA 260
RI CNKY+ K+A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGR 585
P KI S+KWGFTK+ RDE+ +L+ EGR
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGR 185
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 139 bits (337), Expect = 2e-33
Identities = 66/95 (69%), Positives = 73/95 (76%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQKSGG 535
VR D A EALRRAKFKFPGRQR + G
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWG 479
Score = 131 bits (316), Expect = 6e-31
Identities = 57/76 (75%), Positives = 64/76 (84%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKTA 260
LEA RI CNKY+ K A
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGR 585
P ++ S KWGFT+++RDE+ KL+ EGR
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGR 496
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 423 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 331
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -3
Query: 316 DADNVERVKSHADMELILSAVFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 152
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 151 STVA 140
+ ++
Sbjct: 203 AHIS 206
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 254
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPIMSVRSSD 445
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 411 LDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKDLRIKKV 530
L P P L GRH +R+ +S S + DLR++++
Sbjct: 207 LAMPESPRWLAMRGRHADARVVLARTSDSAEEADLRLEEI 246
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 408 ALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKDLRIKK 527
A + + C G R++ + A+PSSSS LR+K+
Sbjct: 6 AQSAAAAACFATAGDARRAASVVAMPSSSSSATTSLRMKR 45
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 362 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQR 511
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR R
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHR 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,390,199
Number of Sequences: 37544
Number of extensions: 515196
Number of successful extensions: 1405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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