Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40088
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 144 4e-35
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 28 5.6
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 27 9.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 9.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 9.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 9.8
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 144 bits (350), Expect = 4e-35
Identities = 64/78 (82%), Positives = 68/78 (87%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 201 SSEALEAGRICCNKYLVK 254
SSEALEA RIC NKY+VK
Sbjct: 61 SSEALEAARICANKYMVK 78
Score = 133 bits (322), Expect = 1e-31
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K+CGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG + S
Sbjct: 78 KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQ 508
+R + IEA RRAKFKFPGRQ
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQ 163
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGR 585
P I S+KWGFTK++R+++E++R EGR
Sbjct: 160 PGRQIIVSSRKWGFTKWDREDYERMRAEGR 189
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 454 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 332
+P VT A + LSN T ST LA T +L P+S A
Sbjct: 46 VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 384 GLPNAPRIPVWSLSAPA 334
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 81 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 227
R C + K I D K+ A ++ + +++ EYEQ++S +AG+
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 405 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKDLR 518
F+LDSP+ P +L GG + C + SP + +R
Sbjct: 36 FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLRMR 73
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 143 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 42
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = -2
Query: 266 PFRSLYEVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 87
P ++ E ++AD S LQ QL + H V + + +LL I T + Y+
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHYVIPV--ALLCSILGTIVRFCYSDD 281
Query: 86 EPRFRIRFIFAVP 48
E F RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,039
Number of Sequences: 27780
Number of extensions: 404709
Number of successful extensions: 1108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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