Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40088
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   138   3e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   138   4e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   137   6e-33
At5g47870.1 68418.m05914 expressed protein                             29   3.9  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   5.2  
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    28   5.2  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   9.1  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  138 bits (334), Expect = 3e-33
 Identities = 65/100 (65%), Positives = 73/100 (73%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQKSGGSQSMN 550
           VR  D       EALRRAKFKFPGRQ+    +  G    N
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177



 Score =  138 bits (333), Expect = 4e-33
 Identities = 61/80 (76%), Positives = 68/80 (85%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTA 260
           SSEALEA RI CNKY+VK+A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLR 573
           P   KI VS+KWGFTK+ R E+ KLR
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLR 185


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  138 bits (333), Expect = 4e-33
 Identities = 61/80 (76%), Positives = 68/80 (85%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTA 260
           SSEALEA RI CNKY+VK+A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  137 bits (331), Expect = 8e-33
 Identities = 65/100 (65%), Positives = 73/100 (73%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQKSGGSQSMN 550
           VR  D       EALRRAKFKFPGRQ+    +  G    N
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGR 585
           P   KI VS+KWGFTK+ R +F KLR+E R
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKR 189


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  137 bits (332), Expect = 6e-33
 Identities = 61/80 (76%), Positives = 68/80 (85%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTA 260
           SSEALEA RI CNKY+VK+A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  137 bits (331), Expect = 8e-33
 Identities = 65/100 (65%), Positives = 73/100 (73%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQKSGGSQSMN 550
           VR  D       EALRRAKFKFPGRQ+    +  G    N
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGR 585
           P   KI VS+KWGFTK+ R ++ KLR+E R
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKR 189


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 281 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 460
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 461 VIEALRRAKFKFP 499
           +IE LR    K P
Sbjct: 78  LIEILRDLNKKIP 90


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180  SDEYEQLSSEALEAGRICCNKYLV 251
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 246 LVKTAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 422
           L+K+   +S I   DF T      S K   A ++IG+ +GC+V   S  +    F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527

Query: 423 S 425
           +
Sbjct: 528 N 528


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 129 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 22
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,629
Number of Sequences: 28952
Number of extensions: 383044
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)