Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40087
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.3  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    22   5.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.1  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 618 PFRTANAQSFNGYYWGSF 671
           PFR  +  S+ GY+ GS+
Sbjct: 75  PFRPMHQNSYTGYHLGSY 92


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 610 YFSFLNFIQ*FYVFEVSLIDKGRTVFFTCAVKPIICEPIFC 488
           Y+  L F   F +F + L+      +F CA+  ++C   FC
Sbjct: 262 YYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFC 302


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 727 IIGPLDSGGPRYDRIGKFPRVKK 795
           +IG + SGGP   +  K+P  +K
Sbjct: 45  VIGGITSGGPIPTKSSKYPIKRK 67


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 34  HTAHLMVSGYRRPWTSAMPGAEPS 105
           +T H+   G+  P+T  M G E S
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVECS 509


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 70  GDGNHSPSGGP 38
           G GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,463
Number of Sequences: 336
Number of extensions: 4666
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)