Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40087
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  28   8.4  

>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 852 KG*KPGAPLLEKGPLRKNL--FFYPREFTNSVIPWTARIQW 736
           KG +   P+  KGPLR+ +  + + + + N V+PW +   W
Sbjct: 768 KGTRSSRPIPVKGPLREEIEQWLFLKHW-NEVVPWVSSFAW 807


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 109 SGLALPLALLKSMGDGNHSPSGGPYARLPTK 17
           SG+  PLA   S  D  H P GGP A  PT+
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGP-AYSPTE 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,205,241
Number of Sequences: 59808
Number of extensions: 520792
Number of successful extensions: 882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)