Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40087
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12090.1 68417.m01921 cornichon family protein contains Pfam ...    31   1.3  
At4g23410.1 68417.m03374 senescence-associated family protein si...    28   9.1  
At2g47750.1 68415.m05961 auxin-responsive GH3 family protein sim...    28   9.1  

>At4g12090.1 68417.m01921 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 135

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 677 LIIMEFPLLGIKIVPYLLLGHWIRAVQGMTEL 772
           +++ EF L G+  + Y+L GHW  AV  +  L
Sbjct: 48  MVLPEFGLQGLLCLYYILTGHWFMAVLSLPHL 79


>At4g23410.1 68417.m03374 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 237

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 629 GQCTIL*WILLGVIFFLIIMEFPLLGIKIVPYLLLGH 739
           G C  + W+L   +FF++ +   L+G+ +  +++  H
Sbjct: 62  GACCDVAWVLWVYLFFMVFIIVALMGLTLFGFIVTSH 98


>At2g47750.1 68415.m05961 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 585

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 535 FFTCAVKPIICEPIFCTTL*YNS*GANKRAIKKPSREHFCLRYTVCVFEY 386
           FF+    P++C P++ ++  Y   G N   + KPS   F L   +C FE+
Sbjct: 313 FFSQGKIPLVC-PMYASSETYF--GVNVEPLSKPSDVVFTLLPNMCYFEF 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,901,982
Number of Sequences: 28952
Number of extensions: 375920
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)