Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40081
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    47   1e-07
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.46 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   5.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 28/81 (34%), Positives = 42/81 (51%)
 Frame = +2

Query: 11  VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
           V++M  TRELA QI+ + ++F+ Y S V+V+V +GG         +   C HI+V TPGR
Sbjct: 238 VVIMSPTRELAIQIADQGKKFA-YNSTVKVAVIYGGTSTNHQRGRILGGC-HILVATPGR 295

Query: 191 ILAXXXXXXXXXXXXXXFILD 253
           +                F+LD
Sbjct: 296 LKDFVNRGNVSFNSLKYFVLD 316



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +1

Query: 259 DKMLESLDMRRDVQEIFRN----TPHGKQVMMFSATLSKEIRPVCKXFM 393
           D+ML+ +    DV+E+  +        +Q +MFSAT  +E++ +   F+
Sbjct: 319 DRMLD-MGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFL 366


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 14  LVMCHTRELAFQISK--EYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 175
           LV+   R+LA  ++    +ER    ++  ++SVFFG  P+     +   AC  +VV
Sbjct: 147 LVLYEARKLANVVTDWVNFERIYYKLTKKKLSVFFGNKPVILTVVLPLLACGVMVV 202


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/30 (23%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 517 WSSIMWAIFVKSVQRCIASWH--NCSPTXT 600
           + S++W  ++  ++ C+++W+  +C P  T
Sbjct: 470 YDSLLWHTWMPVMRICVSAWNPKDCDPLIT 499


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 520 SSIMWAIFVKSVQRCIASW 576
           SS + A+F+KSV   + +W
Sbjct: 114 SSSLRAVFIKSVVEFVKTW 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,786
Number of Sequences: 336
Number of extensions: 3234
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)