Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40081
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 127 1e-30
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 3e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 47 3e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 47 3e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 9e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 45 9e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 42 9e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 42 1e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 40 3e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 40 5e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 5e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 39 6e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 37 0.003
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.008
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 32 0.071
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 29 0.50
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 27 2.0
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 4.7
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 26 6.2
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar... 26 6.2
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 127 bits (307), Expect = 1e-30
Identities = 62/102 (60%), Positives = 70/102 (68%)
Frame = +1
Query: 256 CDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKL 435
CDK+LES+DMRRD+QE+FR TP KQVMMFSATLS EIRP+CK FMQ+P+E+YVDDE KL
Sbjct: 206 CDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKL 265
Query: 436 KLHGLQQHYVXXXXXXXXXXXXXXXIYWSSIMWAIFVKSVQR 561
LHGLQQHYV IFVKSV R
Sbjct: 266 TLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSR 307
Score = 87.4 bits (207), Expect = 2e-18
Identities = 44/85 (51%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL--KTACPHIVVG 178
V VLV+CHTRELAFQI EY RFSKY+ VR +VF+GG+ I++D E K+ PHIVV
Sbjct: 120 VSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVA 179
Query: 179 TPGRILAXXXXXXXXXXXXXXFILD 253
TPGR+ A F+LD
Sbjct: 180 TPGRLNALVREKILKVNSVKHFVLD 204
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.4 bits (115), Expect = 3e-07
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = +2
Query: 2 HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 181
+V LV+ TRELA QI + +E K +RV GG+ +QK + +L PH+VV T
Sbjct: 192 YVQALVVAPTRELAHQICQHFELI-KPSPNIRVMSITGGLAVQKQQRLLNKH-PHVVVAT 249
Query: 182 PGRI 193
PGR+
Sbjct: 250 PGRL 253
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +2
Query: 8 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
+ +V+ TRELA+QIS+++E + GVR V GGM + + V + PH++V TPG
Sbjct: 116 FAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKPHVLVCTPG 173
Query: 188 RIL 196
R++
Sbjct: 174 RLM 176
Score = 32.7 bits (71), Expect = 0.054
Identities = 13/56 (23%), Positives = 33/56 (58%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDE 426
D++L+ +D + +I + PH ++ ++FSAT++ ++ + + + P+ V V +
Sbjct: 199 DRLLD-MDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSK 253
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
+ L++ TRELA Q S+ + K+M+ V+V V GG + +D+ + HIVVGTP
Sbjct: 113 IQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTVHIVVGTP 170
Query: 185 GRILAXXXXXXXXXXXXXXFILD 253
GR+L F++D
Sbjct: 171 GRVLDLAGKGVADFSECTTFVMD 193
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.2 bits (102), Expect = 9e-06
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
++ +++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TP
Sbjct: 113 IHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATP 171
Query: 185 GRI 193
GR+
Sbjct: 172 GRL 174
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML S + + +IF+ P QV++ SAT+ +++ V FM+DP+ + V + +L
Sbjct: 171 DEML-SRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKD-ELT 228
Query: 439 LHGLQQHYV 465
L G++Q YV
Sbjct: 229 LEGIKQFYV 237
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
L++ TRELA QI K M+ V GG ++ D L+ H+VVGTPGR+
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQAGV-HVVVGTPGRV 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.9 bits (94), Expect = 9e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
VL++C TRELA Q + + + + + V + GG+ ++ E+ L+ P IV+ TPGR
Sbjct: 333 VLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGLSLKLQEQELRKR-PDIVIATPGR 390
Query: 191 IL 196
+
Sbjct: 391 FI 392
Score = 38.7 bits (86), Expect = 8e-04
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+MLE ++ EI + P +Q M+FSAT++ ++ + + + P+ V+VD++ K
Sbjct: 415 DRMLED-GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK-KTT 472
Query: 439 LHGLQQHYV 465
L Q +V
Sbjct: 473 AKLLTQEFV 481
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/69 (28%), Positives = 41/69 (59%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D++L + + +I+R P G QV++ SATL +++ + F +P+ + V + +L
Sbjct: 173 DELLNQ-GFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRD-ELT 230
Query: 439 LHGLQQHYV 465
L GL+Q+++
Sbjct: 231 LEGLKQYFI 239
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
L++ TRELA QI +M+ V+ GG + D + L H+V GTPGR+
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG-QHVVSGTPGRV 150
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
++ L++ TRELA QI +++ ++ ++ ++ GGM + + L PH+VV TP
Sbjct: 76 IFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIRQSIDLSKR-PHVVVATP 133
Query: 185 GRI 193
GR+
Sbjct: 134 GRL 136
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 8 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
Y +V+ TRELA QI E +F++ + G R GG ++ + HIVV TPG
Sbjct: 327 YAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQGA-HIVVATPG 384
Query: 188 RIL 196
R+L
Sbjct: 385 RLL 387
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTP 184
VLV+ TRELA Q YE + + G + V +GG P + K A +++GTP
Sbjct: 239 VLVVSPTRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTP 293
Query: 185 GRIL 196
GR+L
Sbjct: 294 GRLL 297
Score = 34.3 bits (75), Expect = 0.018
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPH-----GKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDD 423
D+ML++ +D++ I +TP +Q + FSAT + +R + F++DP+++ +
Sbjct: 319 DRMLDT-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGS 377
Query: 424 E 426
+
Sbjct: 378 D 378
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 39.1 bits (87), Expect = 6e-04
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
VLV+ TRELA QI +E +F K S +R + +GG+P L I + TPGR
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGR 255
Query: 191 IL 196
+L
Sbjct: 256 LL 257
Score = 32.7 bits (71), Expect = 0.054
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML+ + +++I +Q +MFSAT KE++ + + ++ D ++V V
Sbjct: 279 DRMLD-MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAA 337
Query: 439 LHGLQQ 456
H ++Q
Sbjct: 338 SHNIKQ 343
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKL 435
D++ E + + EI P +Q ++FSATL + + K +QDP+ V +D E+K+
Sbjct: 223 DRLFE-MGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKV 280
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
L++ RELA Q K + FSK + +R GG+ +++ +L + P IVV TPGR
Sbjct: 143 LILSPNRELALQTVKVVKDFSKG-TDLRSVAIVGGVSLEEQFSLL-SGKPDIVVATPGRF 200
Query: 194 L 196
L
Sbjct: 201 L 201
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.5 bits (78), Expect = 0.008
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV-DDEAKL 435
D ML S D++ + R+ P G Q + SATLSK I + K ++P + V D EA
Sbjct: 174 DLML-SFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASG 232
Query: 436 KL 441
KL
Sbjct: 233 KL 234
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 32.3 bits (70), Expect = 0.071
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV-DDEAKL 435
D++L+ + R + I + P +Q M+FSAT +K ++ + + +Q+P + V +++
Sbjct: 195 DRILD-MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSS 253
Query: 436 KLHGLQQHYV 465
L Q Y+
Sbjct: 254 TPSNLNQFYL 263
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.50
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
D+M + L V I N +Q ++FSAT + + + + ++ P+E+ V
Sbjct: 578 DRMFD-LGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITV 629
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYM-----SGVRV--SVFFGGM-PIQKDEEVLKTACPHI 169
L++ TRELA QI + Y G ++ ++ GG + D + P +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 170 VVGTPGRI 193
V+GTPGR+
Sbjct: 136 VIGTPGRL 143
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.5 bits (58), Expect = 2.0
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Frame = +1
Query: 253 WCDKMLESLDMRRDVQEIFRNTPHGKQVMM--------FSATLSKEIRPVCKXFMQDPME 408
WC +M+E+LD R F + ++ FSATL K C +Q+ +
Sbjct: 794 WCKEMMENLDNLRTGPYNFHDKVFENEINQLIESSREAFSATLFKAALKSCFYDLQNARD 853
Query: 409 VYVDDEAKLKLHGLQQHYVXXXXXXXXXXXXXXXIYWSSIMWAIFVKSVQ 558
Y + A K+H + V +WS +W +K Q
Sbjct: 854 WYREVTADRKMH---RDLVCRWIETQVLLLATFAPHWSEHIWLTTLKKPQ 900
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 328 KQVMMFSATLSKEIRPVCKXFMQD 399
+Q +MFSAT ++I+ + + F++D
Sbjct: 365 RQTLMFSATFPRDIQLLARDFLKD 388
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 525 NHVGDFCEISTALYSFLAQLLTDQXFPAIGI 617
+ + DF E ST L+S LAQL P + I
Sbjct: 122 DQIDDFAEASTILFSQLAQLPIVANIPNLSI 152
>SPBC21H7.06c |||inositol metabolism protein Opi10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 546 EISTALYSFLAQLLTDQXFP-AIGIHRDLDPCLASLPLSTVQ 668
+I T LY+FLA T Q P +IG+ DL P +PL Q
Sbjct: 137 KILTNLYNFLASFATSQLPPNSIGL-GDLRPNDTFIPLRVFQ 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,331
Number of Sequences: 5004
Number of extensions: 54505
Number of successful extensions: 175
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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