Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40081
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 138 4e-33
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 138 4e-33
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 138 4e-33
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 52 3e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 3e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 52 4e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 52 4e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 52 4e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 52 4e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 52 5e-07
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 52 5e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 6e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 6e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 47 1e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 47 1e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 2e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 46 3e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 46 3e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 45 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 6e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 45 6e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 44 8e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 42 4e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 42 5e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 41 7e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 41 7e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 41 7e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 41 0.001
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 40 0.001
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 40 0.002
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 39 0.004
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 38 0.005
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 38 0.005
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 38 0.005
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.005
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.009
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.009
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 35 0.047
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 35 0.047
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 34 0.082
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 34 0.082
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 31 0.58
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 31 0.76
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 31 0.76
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 31 1.0
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 30 1.3
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 30 1.3
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.8
At4g13750.1 68417.m02134 expressed protein 27 9.4
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 138 bits (333), Expect = 4e-33
Identities = 69/102 (67%), Positives = 72/102 (70%)
Frame = +1
Query: 256 CDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKL 435
CDKMLESLDMRRDVQEIF+ TPH KQVMMFSATLSKEIRPVCK FMQDPME+YVDDEAKL
Sbjct: 199 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 258
Query: 436 KLHGLQQHYVXXXXXXXXXXXXXXXIYWSSIMWAIFVKSVQR 561
LHGL QHY+ IFVKSV R
Sbjct: 259 TLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR 300
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/83 (51%), Positives = 55/83 (66%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I+ +++LK CPHIVVGTP
Sbjct: 115 VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 185 GRILAXXXXXXXXXXXXXXFILD 253
GR+LA FILD
Sbjct: 175 GRVLALAREKDLSLKNVRHFILD 197
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 138 bits (333), Expect = 4e-33
Identities = 69/102 (67%), Positives = 72/102 (70%)
Frame = +1
Query: 256 CDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKL 435
CDKMLESLDMRRDVQEIF+ TPH KQVMMFSATLSKEIRPVCK FMQDPME+YVDDEAKL
Sbjct: 116 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 175
Query: 436 KLHGLQQHYVXXXXXXXXXXXXXXXIYWSSIMWAIFVKSVQR 561
LHGL QHY+ IFVKSV R
Sbjct: 176 TLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSR 217
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/83 (51%), Positives = 55/83 (66%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I+ +++LK CPHIVVGTP
Sbjct: 32 VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 185 GRILAXXXXXXXXXXXXXXFILD 253
GR+LA FILD
Sbjct: 92 GRVLALAREKDLSLKNVRHFILD 114
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 138 bits (333), Expect = 4e-33
Identities = 69/102 (67%), Positives = 72/102 (70%)
Frame = +1
Query: 256 CDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKL 435
CDKMLESLDMRRDVQEIF+ TPH KQVMMFSATLSKEIRPVCK FMQDPME+YVDDEAKL
Sbjct: 199 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 258
Query: 436 KLHGLQQHYVXXXXXXXXXXXXXXXIYWSSIMWAIFVKSVQR 561
LHGL QHY+ IFVKSV R
Sbjct: 259 TLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSR 300
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/83 (51%), Positives = 55/83 (66%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I+ +++LK CPHIVVGTP
Sbjct: 115 VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 185 GRILAXXXXXXXXXXXXXXFILD 253
GR+LA FILD
Sbjct: 175 GRVLALAREKDLSLKNVRHFILD 197
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/80 (36%), Positives = 41/80 (51%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA QI K Y+ GV+V GG +++D+ +L+ H+VVGTPGR+
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRV 168
Query: 194 LAXXXXXXXXXXXXXXFILD 253
F+LD
Sbjct: 169 FDMLKRQSLRADNIKMFVLD 188
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML S + + +IF+ P QV +FSAT+ E + + FM P+ + V + +L
Sbjct: 191 DEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELT 248
Query: 439 LHGLQQHYV 465
L G++Q YV
Sbjct: 249 LEGIKQFYV 257
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
++ L++C TRELA QI+ E + K+ G+ V GG + D++ L++ I++ TP
Sbjct: 406 IFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATP 465
Query: 185 GRIL 196
GR+L
Sbjct: 466 GRLL 469
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +1
Query: 265 MLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQ 396
+L L RRDV++I P +Q ++FSAT+ KE+R V + ++
Sbjct: 495 LLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 538
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2
Query: 8 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
+ +++ TRELA QI E ++FS Y +GV+V V +GG PI + L+ C I+V TPG
Sbjct: 231 FAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPIHQQLRELERGC-DILVATPG 288
Query: 188 RI 193
R+
Sbjct: 289 RL 290
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2
Query: 8 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
+ +++ TRELA QI E ++FS Y +GV+V V +GG PI + L+ C I+V TPG
Sbjct: 231 FAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPIHQQLRELERGC-DILVATPG 288
Query: 188 RI 193
R+
Sbjct: 289 RL 290
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
++VL++C TRELA QI+ E + K G+ V GG + D++ L++ I++ TP
Sbjct: 453 IFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATP 512
Query: 185 GRIL 196
GR+L
Sbjct: 513 GRLL 516
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 265 MLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQ 396
+L L +RDV++I P +Q ++FSAT+ KE+R V + ++
Sbjct: 542 LLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 585
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/80 (36%), Positives = 41/80 (51%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA QI K Y+ GV+ GG +++D+ VL++ H+VVGTPGR+
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQSGV-HVVVGTPGRV 170
Query: 194 LAXXXXXXXXXXXXXXFILD 253
F+LD
Sbjct: 171 FDLLRRQSLRADAIKMFVLD 190
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML S + + +IF+ P QV +FSAT+ E + + FM P+ + V + +L
Sbjct: 193 DEML-SRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELT 250
Query: 439 LHGLQQHYV 465
L G++Q YV
Sbjct: 251 LEGIKQFYV 259
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/80 (36%), Positives = 40/80 (50%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA QI K Y GV+V GG +++D+ +L+ H+VVGTPGR+
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQ-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRV 168
Query: 194 LAXXXXXXXXXXXXXXFILD 253
F+LD
Sbjct: 169 FDMLRRQSLRPDCIKMFVLD 188
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML S + + +IF+ P QV +FSAT+ E + + FM P+ + V + +L
Sbjct: 191 DEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELT 248
Query: 439 LHGLQQHYV 465
L G++Q YV
Sbjct: 249 LEGIKQFYV 257
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/69 (37%), Positives = 44/69 (63%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML S ++ + +++R PH QV + SATL +EI + + FM DP+ + V + +L
Sbjct: 174 DEML-SKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPD-ELT 231
Query: 439 LHGLQQHYV 465
L G++Q+YV
Sbjct: 232 LEGIKQYYV 240
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V VLV+ +RELA Q K + + + ++ GG I +D + L+ H V GTP
Sbjct: 91 VQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKSIGEDIKKLERGV-HAVSGTP 148
Query: 185 GRI 193
GR+
Sbjct: 149 GRV 151
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 17 VMCH-TRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
V+C TRELA QI E ++FSK G+RVS +GGM + + LK C IVV TPGR+
Sbjct: 305 VICAPTRELAHQIFLEAKKFSK-AYGLRVSAVYGGMSKHEQFKELKAGC-EIVVATPGRL 362
Query: 194 LAXXXXXXXXXXXXXXFILDGVIRCWNL 277
+ +LD R ++L
Sbjct: 363 IDMLKMKALTMMRASYLVLDEADRMFDL 390
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDD 423
D+M + L V+ I +Q ++FSAT+ ++ + + + DP+ V V +
Sbjct: 385 DRMFD-LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGE 438
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
+ VLV+C TRELA Q + E KY + V V GG + ++ ++T I+V TP
Sbjct: 459 IIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATP 518
Query: 185 GRI 193
GR+
Sbjct: 519 GRL 521
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 381
D +L+ + RRD++ I P +Q +FSAT+ +E+R +C
Sbjct: 547 DHLLD-MGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQIC 586
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V+ LV+ TRELAFQ++++++ ++ +R SV GGM + L + PHIV+ TP
Sbjct: 127 VFALVVTPTRELAFQLAEQFKALGSCLN-LRCSVIVGGMDMLTQTMSL-VSRPHIVITTP 184
Query: 185 GRI 193
GRI
Sbjct: 185 GRI 187
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
+ VLV+C TRELA Q + E KY + V V GG + ++ L+ + I+V TP
Sbjct: 157 IIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATP 216
Query: 185 GRI 193
GR+
Sbjct: 217 GRL 219
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 381
D +L+ + RR+++ I P +Q +FSAT+S E+R +C
Sbjct: 245 DHLLD-MGFRREIERIIAAVPKQRQTFLFSATVSDEVRQIC 284
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+++ TRELA QI E ++FS Y +GV+V V +GG PI + L+ I+V TPGR+
Sbjct: 241 VILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPINQQLRELERGV-DILVATPGRL 298
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +2
Query: 2 HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 181
++ L++ TRELA Q+++ E +K +S V+V GGM +K E LK P IVV T
Sbjct: 279 YLRALIITPTRELALQVTEHLENAAKNLS-VKVVPIVGGMFSEKQERRLKEK-PEIVVAT 336
Query: 182 PGRI 193
PGR+
Sbjct: 337 PGRL 340
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGT 181
+ +++ TRELA Q S+ + SKY++ ++V V GG ++ D +++ P H++VGT
Sbjct: 193 IQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDD--IMRLHQPVHLLVGT 249
Query: 182 PGRIL 196
PGRIL
Sbjct: 250 PGRIL 254
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
DK+L S + + ++E+ + P +Q +MFSAT ++ ++ P + + D+ L
Sbjct: 276 DKLL-SAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ--LT 332
Query: 439 LHGLQQHY 462
L G+ Q+Y
Sbjct: 333 LMGVTQYY 340
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGT 181
+ +++ TRELA Q S+ + SKY++ ++V V GG ++ D +++ P H++VGT
Sbjct: 193 IQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDD--IMRLHQPVHLLVGT 249
Query: 182 PGRIL 196
PGRIL
Sbjct: 250 PGRIL 254
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
DK+L S + + ++E+ + P +Q +MFSAT ++ ++ P + + D+ L
Sbjct: 276 DKLL-SAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ--LT 332
Query: 439 LHGLQQHY 462
L G+ Q+Y
Sbjct: 333 LMGVTQYY 340
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+++ TRELA QI E +FS Y +GV+V V +GG P+ + L+ I+V TPGR+
Sbjct: 228 VILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGTPVNQQIRELERGV-DILVATPGRL 285
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 259 DKMLE---SLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQD 399
D+ML+ +R+ VQ++ P +Q M+FSAT +EI+ + F+ +
Sbjct: 308 DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSN 357
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
+ LV+C TRELA Q + E KY + V V GG + +++ ++T I+V TP
Sbjct: 131 ILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATP 190
Query: 185 GRI 193
GR+
Sbjct: 191 GRL 193
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 381
D +L+ + R+D++ I P +Q +FSAT+ +E+R +C
Sbjct: 219 DHLLD-MGFRKDIERIISAVPKERQTFLFSATVPEEVRQIC 258
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/62 (35%), Positives = 40/62 (64%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
VL++ TRELA QI + +++ + ++ + GG+ +++ E VL++ P IVV TPGR
Sbjct: 241 VLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGGLSVREQEVVLRSM-PDIVVATPGR 298
Query: 191 IL 196
++
Sbjct: 299 MI 300
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAK 432
D++L++ ++ E+ R P +Q M+FSAT+++E++ + K + P+ + D A+
Sbjct: 323 DRLLQT-GFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSAR 379
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGT 181
+ +++ TRELA Q S+ + SKY+ + V V GG ++ D +++ P H++VGT
Sbjct: 223 IQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLRDD--IMRLYQPVHLLVGT 279
Query: 182 PGRIL 196
PGRIL
Sbjct: 280 PGRIL 284
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/68 (27%), Positives = 40/68 (58%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
DK+L S++ + ++E+ + P +Q++MFSAT ++ +++ P + + D+ L
Sbjct: 306 DKLL-SVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQ--LT 362
Query: 439 LHGLQQHY 462
L G+ Q+Y
Sbjct: 363 LMGVTQYY 370
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
+ +++ +REL QI +E E+ + V GG + EE LK P IVVGTP
Sbjct: 192 IQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTP 251
Query: 185 GRI 193
GRI
Sbjct: 252 GRI 254
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/61 (42%), Positives = 36/61 (59%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA Q+ KE + + Y+S V V +GG+ + L T +VVGTPGRI
Sbjct: 184 LVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSAL-TRGVDVVVGTPGRI 239
Query: 194 L 196
+
Sbjct: 240 I 240
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEV-YVDDEAKL 435
D+ML ++ V+ I N P +Q M+FSAT+ ++ + + ++ +P+ + V D+ +
Sbjct: 262 DQML-AVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEK 320
Query: 436 KLHGLQQHYV 465
G++ + +
Sbjct: 321 LAEGIKLYAI 330
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +2
Query: 8 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
+ V+ TRELA QI++++E +S +R +V GG+ + + + PH++V TPG
Sbjct: 91 FACVLSPTRELAIQIAEQFEALGADIS-LRCAVLVGGID-RMQQTIALGKRPHVIVATPG 148
Query: 188 RI 193
R+
Sbjct: 149 RL 150
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGT 181
+ +++ TRELA Q S+ + K++ ++V V GG ++ D +++ P H++VGT
Sbjct: 200 IQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLKDD--IMRLYQPVHLLVGT 256
Query: 182 PGRIL 196
PGRIL
Sbjct: 257 PGRIL 261
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
DK+L S + + V+ + P +Q++MFSAT ++ F+ +P + + DE LK
Sbjct: 283 DKLL-SQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLK 341
Query: 439 LHGLQQHY 462
G+ Q Y
Sbjct: 342 --GITQFY 347
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP-HIVVGT 181
+ +++ TRELA Q S+ + K++ ++V V GG ++ D +++ P H++VGT
Sbjct: 200 IQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLKDD--IMRLYQPVHLLVGT 256
Query: 182 PGRIL 196
PGRIL
Sbjct: 257 PGRIL 261
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
DK+L S + + V+ + P +Q++MFSAT ++ F+ +P + + DE LK
Sbjct: 283 DKLL-SQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLK 341
Query: 439 LHGLQQHY 462
G+ Q Y
Sbjct: 342 --GITQFY 347
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
VLV+ TRELA QI +E +F S ++ + +GG+P L+ IV+ TPGR
Sbjct: 175 VLVLAPTRELAVQIQQEASKFGS-SSKIKTTCIYGGVPKGPQVRDLQKGV-EIVIATPGR 232
Query: 191 IL 196
++
Sbjct: 233 LI 234
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
D+ML+ + +++I + +Q + +SAT KE+ + K F+ +P +V +
Sbjct: 256 DRMLD-MGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVII 307
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDD-EAKL 435
D++LE + D+ +I + P +Q +FSAT + +++ + + + P+ V VDD K+
Sbjct: 246 DRILEE-NFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKV 304
Query: 436 KLHGLQQHY 462
GL+Q Y
Sbjct: 305 TNEGLEQGY 313
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
V+V+C TRELA Q E K+ S VS+ GG + + + + + ++V+ TPGR
Sbjct: 164 VIVICPTRELAIQTKNVAEELLKHHSQT-VSMVIGGNNRRSEAQRIASG-SNLVIATPGR 221
Query: 191 IL 196
+L
Sbjct: 222 LL 223
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+++ TREL+ QI K E F + V + GG ++ D L+ ++++GTPGR+
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D++L+ + ++ V I P ++ +FSAT ++ + + K +++ MEV E+K K
Sbjct: 177 DRLLD-MGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSK 235
Query: 439 L-HGLQQHYV 465
GL Y+
Sbjct: 236 TSSGLYCEYL 245
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LVM TREL QI + +FSK + G+R +GG + + LK IVV TPGR+
Sbjct: 606 LVMAPTRELVQQIHSDIRKFSKPL-GIRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRM 663
Query: 194 L 196
+
Sbjct: 664 I 664
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
D+M + + + I +N +Q ++FSAT +++ + + + P+E+ V
Sbjct: 689 DRMFD-MGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQV 740
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML+ + DV+ I P +Q MMFSAT+ IR + K ++ +P+ V + ++ K
Sbjct: 260 DQMLQ-VGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQK 318
Query: 439 L 441
L
Sbjct: 319 L 319
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA Q+ KE+ + + + +GG PI + L + VGTPGR+
Sbjct: 182 LVLAPTRELARQVEKEFRESAPSLDTI---CLYGGTPIGQQMRQLDYGV-DVAVGTPGRV 237
Query: 194 L 196
+
Sbjct: 238 I 238
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLK 438
D+ML+ + DV+ I + P +Q MMFSAT+ IR + K ++ +P+ + + ++ K
Sbjct: 272 DQMLQ-VGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQK 330
Query: 439 L 441
L
Sbjct: 331 L 331
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA Q+ KE+ + + + +GG PI + L + VGTPGRI
Sbjct: 194 LVLAPTRELARQVEKEFRESAPSLDTI---CLYGGTPIGQQMRELNYGI-DVAVGTPGRI 249
Query: 194 L 196
+
Sbjct: 250 I 250
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
VLV+ TRELA Q++ +++ + + G+ +GG E LK IVVGTPGR
Sbjct: 177 VLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEGKLKRGV-DIVVGTPGR 234
Query: 191 I 193
I
Sbjct: 235 I 235
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+V+C TREL+ Q+ + + S + + R + GG I+ E+ L A +VVGTPGRI
Sbjct: 193 VVLCPTRELSEQVYRVAKSISHH-ARFRSILVSGGSRIRPQEDSLNNAID-MVVGTPGRI 250
Query: 194 L 196
L
Sbjct: 251 L 251
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LVM TREL QI + +FSK + + V V +GG + + LK IVV TPGR+
Sbjct: 473 LVMAPTRELVQQIYSDIRKFSKALGIICVPV-YGGSGVAQQISELKRG-TEIVVCTPGRM 530
Query: 194 L 196
+
Sbjct: 531 I 531
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
D+M + + + I +N +Q ++FSAT +++ + + + P+E+ V
Sbjct: 556 DRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQV 607
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V L++ TR+LA Q K + K+ + +RVS+ GG ++ E L T P +++ TP
Sbjct: 99 VRALILSPTRDLAEQTLKFTKELGKF-TDLRVSLLVGGDSMEDQFEEL-TKGPDVIIATP 156
Query: 185 GRIL 196
GR++
Sbjct: 157 GRLM 160
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 268 LESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKL 435
L + + +I +Q ++FSATL + K +++P V +D E K+
Sbjct: 185 LFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKI 240
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 223 FETFKTLHP*WCDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDP 402
F+ K L D++LE + D+++I P +Q +FSAT S ++ + + + P
Sbjct: 299 FKNLKFLVMDEADRILEQ-NFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSP 357
Query: 403 MEVYVDDEAK-LKLHGLQQHY 462
+ + VD+ K + GL+Q Y
Sbjct: 358 VYIDVDEGRKEVTNEGLEQGY 378
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +2
Query: 11 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
VLV+C TRELA Q + KY S V GG + + E+L +++V TPGR
Sbjct: 229 VLVICPTRELAIQSYGVAKELLKYHSQT-VGKVIGGEKRKTEAEILAKGV-NLLVATPGR 286
Query: 191 IL 196
+L
Sbjct: 287 LL 288
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/60 (26%), Positives = 35/60 (58%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+++ TREL+ QI + F ++ V + GG ++ D ++++ ++++GTPGR+
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 35.1 bits (77), Expect = 0.047
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYM--SG---VRVSVFFGGMPIQKDEEVLKTACPHIVVG 178
L++C +RELA Q + E+F + +G +R + GG+ ++ EV+K HIVV
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV-HIVVA 284
Query: 179 TPGRI 193
TPGR+
Sbjct: 285 TPGRL 289
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 268 LESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLKLHG 447
L L D++E+F + +Q ++FSAT+ +I+ + + P+ V V L
Sbjct: 314 LVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDV 373
Query: 448 LQQ 456
+Q+
Sbjct: 374 IQE 376
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 35.1 bits (77), Expect = 0.047
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +2
Query: 5 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 184
V L++ TRELA Q K + + + ++ GG + +D L+ H+V GTP
Sbjct: 104 VQALILSPTRELATQTEKTIQAIGLH-ANIQAHACIGGNSVGEDIRKLEHGV-HVVSGTP 161
Query: 185 GRI 193
GR+
Sbjct: 162 GRV 164
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEA 429
D++L+S + + I P +Q ++FSAT +K+++ + + ++DP + V EA
Sbjct: 228 DRVLDSA-FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEA 283
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 34.3 bits (75), Expect = 0.082
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERF--SKYMSG---VRVSVFFGGMPIQKDEEVLKTACPHIVVG 178
LV+C +RELA Q E+F S G +R + GG+ ++ +V+K HIVV
Sbjct: 177 LVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV-HIVVA 235
Query: 179 TPGRI 193
TPGR+
Sbjct: 236 TPGRL 240
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQ-DPMEVYVDDEAKL 435
D+ML+ + V+ I NT +Q++MFSAT ++ + + FM +P++V +
Sbjct: 275 DRMLD-MGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLA 333
Query: 436 KLHGLQQ 456
H + Q
Sbjct: 334 ANHDVMQ 340
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
LV+ TRELA QIS + R + G++ +GG +++ IV+GTPGR+
Sbjct: 195 LVLSPTRELAVQIS-DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV-DIVIGTPGRL 252
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+V+ TREL Q+ + + K + + ++ GG P+ ++ +++GTPGR+
Sbjct: 190 MVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGV-ELIIGTPGRV 247
Query: 194 LAXXXXXXXXXXXXXXFILDGV 259
+ F+LD V
Sbjct: 248 VDLLSKHTIELDNIMTFVLDEV 269
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 14 LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 193
+V+ TREL Q+ + + K + + ++ GG P+ ++ +++GTPGR+
Sbjct: 53 MVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGV-ELIIGTPGRV 110
Query: 194 LAXXXXXXXXXXXXXXFILDGV 259
+ F+LD V
Sbjct: 111 VDLLSKHTIELDNIMTFVLDEV 132
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 8 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
+ LV+ TREL Q+ + E+ + GG K++ L+ I++ TPG
Sbjct: 106 FALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGI-SILIATPG 164
Query: 188 RIL 196
R+L
Sbjct: 165 RLL 167
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
D+ML+ + +++I +Q +++SAT +E+ + + F++DP + +
Sbjct: 322 DRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAII 373
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 259 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
D+ML+ + +++I +Q +++SAT +E+ + + F++DP + +
Sbjct: 322 DRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAII 373
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +1
Query: 280 DMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVDDEAKLKLHGLQQH 459
D + +++I R P+ QV++FSAT ++ ++ ++DP +++V E L L ++Q+
Sbjct: 259 DSLKIMKDIGRVNPNF-QVLLFSATFNETVKDFVARTVKDPNQLFVKRE-DLALDSVKQY 316
Query: 460 YV 465
V
Sbjct: 317 KV 318
>At4g13750.1 68417.m02134 expressed protein
Length = 2137
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = +2
Query: 605 CHW---YPPRFGPLFSVSPAVNSS 667
CHW Y P+FGPL +NS+
Sbjct: 272 CHWDLRYAPQFGPLMGCLNEINST 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,910,371
Number of Sequences: 28952
Number of extensions: 285761
Number of successful extensions: 729
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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