Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40080
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.34 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.60 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   3.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.2  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   7.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.8  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   9.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.8  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 272 SPFAASPSTSPGVK-----TSESRPSSFGESVSAPVKITPERMAQE 394
           +P ++S  TSP        TS   P+S   + SAP+ I  +R A +
Sbjct: 20  TPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYD 65


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 468 HHPVDPQETVHRLISAHCS 524
           HH V+PQ   H+ + A CS
Sbjct: 260 HHLVNPQSLNHQEVKAECS 278


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 273 HHLQQVQAQVPG*KHQNRDHLHLEN 347
           HH+QQ Q Q     HQN +   L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 273 HHLQQVQAQVPG*KHQNRDHLHLEN 347
           HH+QQ Q Q     HQN +   L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 273 HHLQQVQAQVPG*KHQNRDHLHLEN 347
           HH+QQ Q Q     HQN +   L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 273 HHLQQVQAQVPG*KHQNRDHLHLEN 347
           HH+QQ Q Q     HQN +   L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 333 LHLENPLVHL*KLPQNAWHKRFMMRLNDCIDVDSCAWPTALLHH---AHH 473
           LH  +  +H     QN  H+     +N C  +   +   A+LHH   +HH
Sbjct: 306 LHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHH 355


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 34  LKHRTLL*LENELYIFFVYYLYGA*Y 111
           +KH   L L N+  I F YY Y A Y
Sbjct: 46  VKHFHPLALSNKNAIDFNYYYYAATY 71


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 203 RHFLFTPNEILWF 165
           RH L T N+++WF
Sbjct: 183 RHGLETLNQLIWF 195


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 605 PLNHGAFAHRSYEPCKK 555
           P  HG FAH     C K
Sbjct: 108 PRKHGYFAHEEPHICDK 124


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 100 HTGNTRKKYTIRFQVTVKSDVLNLKRLFCTFV 5
           H      KYT R+       +L+ KRL   ++
Sbjct: 26  HRSTRDDKYTTRYDNVDVDRILHSKRLLLNYI 57


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 356 APVKITPERMAQEIYDEIKRLH 421
           APVKI+ + +   +    K+LH
Sbjct: 488 APVKISVQEVLNRVRKPTKKLH 509


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 70  LYIFFVYYLY 99
           +Y+F VYY+Y
Sbjct: 151 IYLFTVYYIY 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,800
Number of Sequences: 336
Number of extensions: 3918
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)