Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40080
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.91 
SB_1940| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   3.7  
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   8.5  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +2

Query: 257 KRRRCSPFAASPSTSPGVKTSESRPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQL 436
           KRRRC P A S S S    +S +  S F E      + + E+++  ++ E KRL RR  L
Sbjct: 179 KRRRCIPMATSSSPS----SSSNTDSPFLEITP---RYSQEQLSTNLHMEWKRLQRRKHL 231

Query: 437 R 439
           +
Sbjct: 232 K 232


>SB_1940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 438 AWPTALLHHAHHPVDPQETVHRLISAHCSQTCSRFCT 548
           AW T     A   VDP+E VH +ISA      S  C+
Sbjct: 38  AWVTLAARGAEVVVDPREVVHHIISAETMVIESNSCS 74


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +3

Query: 417 CIDVDSCAWPTALLHHAHHPVDPQETVHRLISAHCSQTCSRF-CTIHF-FTG---FV*SV 581
           C+D++ C   T   +H+H+        H    A+C+ T   F CT H  ++G       +
Sbjct: 90  CVDINECRTDTLAANHSHY----AHNCH--YDANCTNTKGSFYCTCHTGYSGDGVTCVDI 143

Query: 582 SECSMIQRWA-LPC*V*ICISFTKLCLNS 665
           SEC + + WA  P    I ++ T  C N+
Sbjct: 144 SEC-IPRLWAHSPATTLITVTLTPNCTNT 171


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 411 NDCIDVDSCAWPTALLH----HAHHPV 479
           +D I + SCA PTA +H     AHHPV
Sbjct: 248 DDVIPLASCAIPTATVHMLLPFAHHPV 274


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 518 LFTNVLAFLHYSLFYRVRMICERMLHDSEVGSTVLSMNLYFF 643
           L T +L+F+   LF+ V++   + LH +++   VL   +YFF
Sbjct: 409 LLTFLLSFIRSFLFFYVKVAASKALH-NKMFCAVLRAPMYFF 449


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,105,610
Number of Sequences: 59808
Number of extensions: 465308
Number of successful extensions: 1360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)