Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40080
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    31   1.1  
Z81135-1|CAB03453.1|  627|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AY438643-1|AAR00670.1|  627|Caenorhabditis elegans abnormal DAue...    30   1.9  
Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    29   2.4  
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z74045-3|CAA98551.1|  165|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    27   9.9  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +2

Query: 263 RRCSPFAASPSTSPGVKTSESRPSSFGESVSAPVKITPER 382
           RR SPF++S ST+P +K+   R S F ES+   V  +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257


>Z81135-1|CAB03453.1|  627|Caenorhabditis elegans Hypothetical
           protein W01G7.1 protein.
          Length = 627

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 384 WHK-RFMMRLNDCIDVDSCAWPTALLHHAHHPVDPQETVH 500
           W+K R  MR  +C   +    PT  + H H+P+ P   VH
Sbjct: 221 WYKNRRNMRCIECQHCEGKFTPTDFIMHHHYPIKPSGFVH 260


>AY438643-1|AAR00670.1|  627|Caenorhabditis elegans abnormal DAuer
           Formation DAF-5,a Ski oncogene homolog involved in a
           neuronal TGF betapathway (71.0 kD) (daf-5) protein.
          Length = 627

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 384 WHK-RFMMRLNDCIDVDSCAWPTALLHHAHHPVDPQETVH 500
           W+K R  MR  +C   +    PT  + H H+P+ P   VH
Sbjct: 221 WYKNRRNMRCIECQHCEGKFTPTDFIMHHHYPIKPSGFVH 260


>Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical
           protein C34B4.2a protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 RCSPFAASPSTSPGVKTSESRPSSFGESVSAPVKIT 373
           RC P A+ P+    V+  E++ +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = +3

Query: 165 KPEDFVGRKKKMACATLKRNLDWESKAQLPQREEDVHHLQQVQAQVPG*KHQNRDHLHLE 344
           K ++ + + +KM C+ L      + K   P R ED+  L  V  Q     H     +HL 
Sbjct: 272 KAKESLAKYQKMYCSALFNYCQIKYKKAAPARLEDLLSLYSVANQANQCFHSLTIFVHLN 331

Query: 345 NPLVHL*KLPQNAWHKRFMMRLND 416
           N      KL  + W    +  +ND
Sbjct: 332 NQNCQFKKLIADTWMST-LKNMND 354


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 329 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 424
           PSSFG +   VSA  K+ PE    +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319


>Z74045-3|CAA98551.1|  165|Caenorhabditis elegans Hypothetical
           protein T27F2.4 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 275 PFAASPSTSPGVKTSESRPSSFGESVSAPVKITPERMAQEIYD-----EIKRLHRR 427
           PF +S S   G  T+ S   S  ES +AP KI   R  QEI D       K+ HRR
Sbjct: 48  PFESSASL--GTSTTSSSRCSSTESSAAPGKIRRGRPQQEIADGQDAHSQKKRHRR 101


>Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical
           protein K03B8.7 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 133 EYKKMKNNIKPHTGNTRKKYTIRFQVTVKSDVLN 32
           E ++MKN I   + N  +K  IRF   ++SD +N
Sbjct: 110 EVQRMKNEIMEISTNKTRKSEIRFSPPIESDRVN 143


>Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical
           protein T23F11.6 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 327 DHLHLENPLVHL*KLPQNAWHKRFMMRLNDCIDVDSCAWPTALLHHAHHPVD---PQETV 497
           D L+L  P++H   L +N+    ++ RLN C+   + A  T  ++           Q  V
Sbjct: 31  DSLNLPPPVIHRECLTRNSCQNGYICRLNRCVGGRALASKTKYVNEEESEYSLKMEQCCV 90

Query: 498 HRLISAHCSQTCS 536
             L+   C   CS
Sbjct: 91  DNLLPERCMGFCS 103


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 293 STSPGVKTSESRP--SSFGESVSAPVKITPERMAQEIYDEIKRLHR 424
           +TSP   T  SRP  +S   S ++P+KI   R+  +  DE + LHR
Sbjct: 752 ATSPIKITEPSRPWRASVSNSATSPIKIHESRV--QPVDESRGLHR 795


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 293 STSPGVKTSESRP--SSFGESVSAPVKITPERMAQEIYDEIKRLHR 424
           +TSP   T  SRP  +S   S ++P+KI   R+  +  DE + LHR
Sbjct: 752 ATSPIKITEPSRPWRASVSNSATSPIKIHESRV--QPVDESRGLHR 795


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 456 LHHAHHPVDPQETVHRLISAH 518
           LHHAHHPV P        S H
Sbjct: 782 LHHAHHPVHPHRGPRASHSQH 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,656
Number of Sequences: 27780
Number of extensions: 367848
Number of successful extensions: 1048
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)