Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40080
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    29   4.0  
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    28   5.2  
At1g58225.1 68414.m06614 expressed protein                             28   6.9  

>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 414 DCIDVDSCAWPTALLHHAHHPVDPQETVHRLISAHCSQTCSRFCTIHFFTGF 569
           D +  + CA P   + H +HPV P     +LI  H   +   FC   F  G+
Sbjct: 76  DVVFHEECAKPLPEIDHPYHPVHPL----KLILLHTRVSNCSFCGEFFSVGY 123


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 275 PFAASPSTSPGVKTSESRPSSFGESVSAPVKITP 376
           P  ASP TSP  K   S PSS    +S  V  TP
Sbjct: 98  PLVASPITSPYWKRCLSLPSSNSAKLSLVVSTTP 131


>At1g58225.1 68414.m06614 expressed protein
          Length = 143

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 639 KYRFILSTVEPTSESWSIR 583
           ++R+ +STV PTS SW+ R
Sbjct: 105 QFRYSISTVAPTSRSWTSR 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,764
Number of Sequences: 28952
Number of extensions: 327589
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)