Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40079
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0710 + 31384519-31385493 35 0.051
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 33 0.20
06_01_0743 - 5534743-5534985,5535075-5535172,5535286-5535429,553... 32 0.47
10_01_0159 - 1807806-1809386 31 0.62
03_05_0562 + 25648581-25648841,25650243-25650626 30 1.4
12_02_1070 - 25814741-25815850 29 2.5
06_03_1126 + 27805982-27806475,27806617-27807202 29 2.5
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 29 2.5
06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432... 29 3.3
12_02_1235 - 27233480-27233986 29 4.4
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 29 4.4
03_01_0344 + 2704860-2705156,2705249-2705494 29 4.4
02_02_0457 + 10503801-10507358 29 4.4
07_03_1663 - 28449654-28451867 28 5.8
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 28 5.8
05_04_0324 - 20273797-20274261 28 5.8
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538... 28 5.8
03_05_0444 + 24396375-24396584,24396968-24397021,24397426-243975... 28 5.8
03_02_0617 - 9886496-9886888,9886984-9887310 28 5.8
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 28 5.8
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 28 7.7
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 28 7.7
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 28 7.7
01_06_1616 + 38670457-38670885,38670989-38671365,38672593-386726... 28 7.7
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 7.7
>01_06_0710 + 31384519-31385493
Length = 324
Score = 35.1 bits (77), Expect = 0.051
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRN 446
P R +PI P VP+ +TPPL P D D +++ + R+R+R+
Sbjct: 162 PFSRAASPIPVPAP-FVPALKTTPPLLPSDTDEEKRPRSRRRRRRS 206
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 303 DRPLER-YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASK 464
+RP R P P +K S+AS PP P ++ + K+K+E+K +N + + K
Sbjct: 153 NRPPPRPEPMPGLKKTAAPSSSSASVPPERPRALEKKPKLKIEQKEHQNLIQSVK 207
>06_01_0743 -
5534743-5534985,5535075-5535172,5535286-5535429,
5535594-5535643,5535733-5535787,5536595-5536686,
5536758-5536806,5536883-5537079,5537160-5537302,
5537625-5537777,5537848-5537896,5537974-5538071,
5538172-5538327,5538434-5538791,5538873-5538943,
5539134-5539217,5539307-5539468,5539534-5539677,
5539769-5540004,5540990-5541374
Length = 988
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 488 YFKAGREVKILKGENAELAQMVVKLRGHV 574
YFK G VK++ G MVVK+ GHV
Sbjct: 493 YFKPGDHVKVVSGVQEGATGMVVKVEGHV 521
>10_01_0159 - 1807806-1809386
Length = 526
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 408 ECPCRWVIAAACWPRSAPSGARPSRW 331
ECP +WV A AC P S P W
Sbjct: 411 ECPAKWVRAMACSPSSVPDWDSDQGW 436
>03_05_0562 + 25648581-25648841,25650243-25650626
Length = 214
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 277 SGVTASPCAACLALRRKVA 221
SG ASPCAAC LRR+ A
Sbjct: 35 SGSAASPCAACKLLRRRCA 53
>12_02_1070 - 25814741-25815850
Length = 369
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +3
Query: 300 LDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKL 425
L PL R P + DEP T TPP SP KI+L
Sbjct: 191 LSLPLLREPVSVPADEPDTTKHDKLTPP-SPSTQQLPPKIRL 231
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 230 SSKR*TSCTRRGSDAARTSSICRFGQAARAIPHSHREGRAPDGAERGQHAAAITHRHGHS 409
SS T+ TR ++ T S + A+R ++ R + HAAA HRH H
Sbjct: 176 SSPPSTASTRCDYQSSFTCSTAAY-PASRCYYYAGRTAATNHSSAASSHAAAQQHRHHHR 234
Query: 410 GKDQ----TGEKETEESGSRFQ 463
G T ET +G F+
Sbjct: 235 GGGGFCCFTSNPETTSNGHSFR 256
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/82 (29%), Positives = 34/82 (41%)
Frame = +3
Query: 240 ARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKI 419
AR+AAHGEAV L R++ R E + E A+ + QE
Sbjct: 124 AREAAHGEAVAELTRQLEEQEQRAAEAAEQEAGRREEAEGKLRAAEEAAERAGKEAQEH- 182
Query: 420 KLERKRQRNRVAASKCRRRKLE 485
E ++ R +A RR+LE
Sbjct: 183 AAELRKHRAALAELATARRELE 204
>06_03_0988 +
26642247-26642506,26642790-26642872,26643150-26643238,
26643478-26643551,26643783-26643833,26644512-26644588,
26644694-26645313
Length = 417
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 129 SERYGDNRYPYSGSACLISRSSTYGGTRNVCATFRRSARQAA 254
S Y N PY+ +A + S S+ YGG+ T+ S A
Sbjct: 365 SNSYSGNNIPYAAAAAMTSGSALYGGSTGSNGTWVASNTSTA 406
>12_02_1235 - 27233480-27233986
Length = 168
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 315 ERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRK 479
E P P T +A P ++ D +E+ + R+R NR +A + R RK
Sbjct: 29 EAAPAPSPSHPDTTAAAATDEPVMAGDDQADEERRRRLRRRISNRESARRSRARK 83
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 212 KCMRDLSSKR*TSCTRRGSDAARTSSICRFGQAARAIPHSHREGRAPDGAERGQHAAAIT 391
K R ++KR + + S+ S G A+P++ +E R G++RG+ +T
Sbjct: 177 KRKRGANNKRNPNPVKNNSEVIEVESSAEKG-VGTAVPNNGQEARKMRGSKRGRTKKDVT 235
Query: 392 HRHGHSGKDQTGEKETE 442
+ + EKE E
Sbjct: 236 EKDEKPVVELEAEKEDE 252
>03_01_0344 + 2704860-2705156,2705249-2705494
Length = 180
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 274 GVTASPCAACLALRRKVAHTFLVPP 200
GV SPC AC LRRK A + P
Sbjct: 8 GVPGSPCGACKFLRRKCAAECVFAP 32
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 391 PSTWTLRKRSNWRERDRGIG*PLPNVDDVSWN 486
P+ + L R+ WR +R + LPN+ D +N
Sbjct: 61 PAKYDLIDRAEWRSHERRVAELLPNLKDAMYN 92
>07_03_1663 - 28449654-28451867
Length = 737
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 254 TRRGSDAARTSSICRFGQAARAIPHSHREGRAPDGAER 367
T R ++A S+ ++ A+P H +GRA DG R
Sbjct: 23 TGRAAEAHHRVSLLFLSSSSAAVPSRHLDGRAADGLLR 60
>05_06_0119 +
25742277-25742434,25742976-25743061,25743146-25743223,
25743919-25744031,25744094-25744171,25744941-25744949,
25744981-25745082,25745165-25745714,25745941-25746146,
25746868-25747031,25747157-25747310
Length = 565
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 126 HSERYGDNRYPYSGSACLISRSSTYGGTRNVCATFRRSARQA 251
H + Y +P GSA + S +T G + C T RS A
Sbjct: 307 HEQFYSQELHPLKGSAAVQSGENTNMGEEDFCLTSLRSLSSA 348
>05_04_0324 - 20273797-20274261
Length = 154
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3
Query: 274 GVTASPCAACLALRRK 227
G T SPCAAC LRRK
Sbjct: 34 GGTGSPCAACKFLRRK 49
>04_03_0191 -
12452369-12452499,12452875-12453077,12453641-12453835,
12454301-12454809
Length = 345
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 236 KR*TSCTRRGSDAARTSSICRFGQAARAIPHSHREGRAPDGAE 364
+R TS RG+ + R C G ++ A EG P G E
Sbjct: 235 RRPTSSVNRGASSGRRRISCYGGGSSDAASDGRMEGEGPSGGE 277
>03_05_0444 +
24396375-24396584,24396968-24397021,24397426-24397517,
24397610-24397685,24397838-24397900,24398002-24398094,
24398694-24398819,24398895-24398999,24399071-24399127,
24399149-24399274,24399348-24399424,24400312-24400384,
24400430-24400492
Length = 404
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 272 AARTSSICRFGQAARAIPHSHREGRAPDGAERGQHAAAI 388
AA ++ RFG A +P S R+GRAP + R A+
Sbjct: 3 AATVAASSRFGPA-HLLPRSRRKGRAPAPSARATACGAV 40
>03_02_0617 - 9886496-9886888,9886984-9887310
Length = 239
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 271 VTASPCAACLALRRKVAHTFLVPP 200
V SPCAAC LRR+ A ++ P
Sbjct: 59 VVLSPCAACKVLRRRCADGCVLAP 82
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -3
Query: 316 SSGLSKSAYTRRPSGV--TASPCAACLALRRK 227
SS +S++ T RP+ TASPC+A A+RR+
Sbjct: 3 SSLVSRTHLTPRPAAAASTASPCSARFAVRRR 34
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 294 ADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
AD RP + TP+++ P P A+ TP + + +++K+K
Sbjct: 286 ADAHRPAYGHGTPLLQPLPPPTPPASLTPVHNDEPVISRDKVK 328
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = -1
Query: 396 RWVIAAACWPRS--APSGARPSRWEWG 322
RW + A C S A G R RW WG
Sbjct: 203 RWAVCAVCHRSSMMARKGERMVRWRWG 229
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 27.9 bits (59), Expect = 7.7
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Frame = +3
Query: 231 RRSARQAAHGE-AVTPLGRRVYADL------DRPLERYPTPIVKDEPQTVPSAASTPPL- 386
RR A + A E V P RR A D +E P P + PQT AA P
Sbjct: 150 RRGASRRARAEPVVAPTTRRRAAPTSKIETGDVAVEAPPAPTTRRRPQTSTEAAPAPTTR 209
Query: 387 ----SPIDMDTQEKIKLERKRQRNRVAASK 464
S + +EK+ R+ R R AA K
Sbjct: 210 RRAQSTVAASAEEKVPRGRRTTR-RAAAKK 238
>01_06_1616 +
38670457-38670885,38670989-38671365,38672593-38672640,
38673200-38673242,38673673-38673786,38674049-38674348
Length = 436
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 304 SKSAYTRRPSGVTASPCAACLALRRK 227
S SA + T SPCAAC LRRK
Sbjct: 23 SASAAANTAACGTGSPCAACKFLRRK 48
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 308 AARAIPHSHREGRAPDGAERGQHAAAI 388
AA A P HR G A R +HAAA+
Sbjct: 8 AAAATPRRHRHGPATPRRRRRRHAAAV 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,496
Number of Sequences: 37544
Number of extensions: 393487
Number of successful extensions: 1670
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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