Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40079
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54216-9|CAN86906.1| 155|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z54216-8|CAA90948.1| 101|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical pr... 48 5e-06
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr... 36 0.020
AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP transcri... 34 0.079
AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP transcri... 34 0.079
AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal ever... 34 0.079
AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal ever... 34 0.079
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 32 0.32
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 30 1.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 30 1.7
AF016681-6|AAB66175.2| 317|Caenorhabditis elegans Hypothetical ... 29 2.2
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 29 3.0
AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical ... 29 3.9
Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical p... 28 5.2
Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical pr... 28 5.2
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 28 5.2
U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeas... 28 5.2
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 28 5.2
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 28 5.2
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 28 5.2
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 28 5.2
U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protei... 28 5.2
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 28 5.2
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 28 5.2
U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical ... 28 5.2
AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding... 28 5.2
AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding... 28 5.2
Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical pr... 28 6.8
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 28 6.8
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 28 6.8
AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical... 28 6.8
AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical... 28 6.8
AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding p... 28 6.8
AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding p... 28 6.8
AF078784-2|AAK18966.1| 258|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z54216-9|CAN86906.1| 155|Caenorhabditis elegans Hypothetical
protein T24H10.7d protein.
Length = 155
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = +3
Query: 381 PLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
P++ + +D QEK KLERKR RNR AA+KCR++K++RI
Sbjct: 69 PINMMALDDQEKKKLERKRARNRQAATKCRQKKMDRI 105
>Z54216-8|CAA90948.1| 101|Caenorhabditis elegans Hypothetical
protein T24H10.7c protein.
Length = 101
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +3
Query: 399 MDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
+D QEK KLERKR RNR AA+KCR++K++RI
Sbjct: 21 LDDQEKKKLERKRARNRQAATKCRQKKMDRI 51
>Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical
protein T24H10.7b protein.
Length = 299
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +3
Query: 399 MDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
+D QEK KLERKR RNR AA+KCR++K++RI
Sbjct: 219 LDDQEKKKLERKRARNRQAATKCRQKKMDRI 249
>Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical
protein T24H10.7a protein.
Length = 319
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +3
Query: 399 MDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
+D QEK KLERKR RNR AA+KCR++K++RI
Sbjct: 239 LDDQEKKKLERKRARNRQAATKCRQKKMDRI 269
>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
protein C34E10.8 protein.
Length = 1024
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 273 PLGRRVY---ADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQR 443
PL RR A + RP + P P + P P A TPP++ + Q+K+K++ +
Sbjct: 375 PLPRRYQGPPAQVLRPPQMGPPPGINQVPYQ-PKANRTPPMTSQQLHEQQKLKMQEEEMM 433
Query: 444 NRVAASKCRRRKLE 485
++ AS R R ++
Sbjct: 434 SQTCASDFRVRPID 447
>AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP
transcription factor FOS-1b protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 363 SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLE 485
S+A P +M+ + K ++RQRN+ AA++CR+R+++
Sbjct: 10 SSAGRKPKEEDNMEDDDDDKRLKRRQRNKEAAARCRQRRID 50
>AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP
transcription factor FOS-1a protein.
Length = 467
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 363 SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLE 485
S+A P +M+ + K ++RQRN+ AA++CR+R+++
Sbjct: 146 SSAGRKPKEEDNMEDDDDDKRLKRRQRNKEAAARCRQRRID 186
>AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform a protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 363 SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLE 485
S+A P +M+ + K ++RQRN+ AA++CR+R+++
Sbjct: 10 SSAGRKPKEEDNMEDDDDDKRLKRRQRNKEAAARCRQRRID 50
>AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform b protein.
Length = 467
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 363 SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLE 485
S+A P +M+ + K ++RQRN+ AA++CR+R+++
Sbjct: 146 SSAGRKPKEEDNMEDDDDDKRLKRRQRNKEAAARCRQRRID 186
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 234 RSARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPSAASTPP 383
RS R A E VTP A D P+E+ P + P P+ A+ P
Sbjct: 481 RSKRNAYGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPAAPAP 530
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 234 RSARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVP-----SAASTPPLSPID 398
RS R + E VTP A D P+E+ P + P P SAA P +P
Sbjct: 286 RSKRNSYGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAA 345
Query: 399 MDTQEKIK 422
D+ + K
Sbjct: 346 TDSGYRSK 353
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 234 RSARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPS----AASTPPLSPIDM 401
RS R A E VTP A D P+E+ P + P P+ +A+ P +P
Sbjct: 153 RSKRNAYGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAPAPA 212
Query: 402 DTQEKIKLER 431
T + +R
Sbjct: 213 ATDSGYRSKR 222
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 234 RSARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPS----AASTPPLSPIDM 401
RS R A E VTP A D P+E+ P + P P+ +A+ P +P
Sbjct: 603 RSKRNAYGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAPAAT 662
Query: 402 DT 407
D+
Sbjct: 663 DS 664
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 333 IVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVA 455
+ D+P T S+A PP SPI ++T E +E ++++ + +
Sbjct: 22 VADDQPST--SSAVAPPPSPIAIETDEDAVVEEEKKKKKTS 60
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 333 IVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVA 455
+ D+P T S+A PP SPI ++T E +E ++++ + +
Sbjct: 22 VADDQPST--SSAVAPPPSPIAIETDEDAVVEEEKKKKKTS 60
>AF016681-6|AAB66175.2| 317|Caenorhabditis elegans Hypothetical
protein F22E5.11 protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 261 EAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQE 413
EA+ LGR L +E+ TP +P T S ++ PL P D E
Sbjct: 189 EAIARLGREPIPVLPSKIEKTATPPTIGDPVTSSSDSTESPLIPEQPDNNE 239
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
resistance protein familyprotein 6 protein.
Length = 1396
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 312 LERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
L+ T + DE V S+PP SP+++++ EKI E QR S + + E +
Sbjct: 703 LQAVETEVQSDE-LFVDGPPSSPPPSPVNIESMEKINKESIFQRANSVLSGSKMSETEYV 761
>AF077542-6|AAC26298.1| 108|Caenorhabditis elegans Hypothetical
protein Y57G7A.3a protein.
Length = 108
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 324 PTPIVKDEPQTVPSAASTPPLSPIDMDTQE 413
P PI K QT P+A + P +PI+ E
Sbjct: 51 PNPIKKSSTQTCPTAQTPPAKTPIERSRHE 80
>Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical
protein R74.3b protein.
Length = 287
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 405 TQEKIKLERKRQRNRVAASKCRRRKLER 488
+QE+ K++R++ +NRVAA R +K ER
Sbjct: 59 SQEE-KMDRRKLKNRVAAQNARDKKKER 85
>Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical
protein R74.3a protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 405 TQEKIKLERKRQRNRVAASKCRRRKLER 488
+QE+ K++R++ +NRVAA R +K ER
Sbjct: 59 SQEE-KMDRRKLKNRVAAQNARDKKKER 85
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTP 380
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform b
protein.
Length = 650
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTP 380
P E P P+V +E +PS A+TP
Sbjct: 182 PEEGNPVPVVSEEEGKIPSVATTP 205
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTP 380
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTP 380
P E P P+V +E +PS A+TP
Sbjct: 429 PEEGNPVPVVSEEEGKIPSVATTP 452
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTP 380
P E P P+V +E +PS A+TP
Sbjct: 433 PEEGNPVPVVSEEEGKIPSVATTP 456
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTP 380
P E P P+V +E +PS A+TP
Sbjct: 433 PEEGNPVPVVSEEEGKIPSVATTP 456
>U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protein
1, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 408 QEKIKLERKRQRNRVAASKCRRRKLER 488
++ I+ R+R +N+VAA CR+R+ +R
Sbjct: 276 RQLIRKIRRRGKNKVAARTCRQRRTDR 302
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 408 QEKIKLERKRQRNRVAASKCRRRKLER 488
++ I+ R+R +N+VAA CR+R+ +R
Sbjct: 499 RQLIRKIRRRGKNKVAARTCRQRRTDR 525
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 408 QEKIKLERKRQRNRVAASKCRRRKLER 488
++ I+ R+R +N+VAA CR+R+ +R
Sbjct: 589 RQLIRKIRRRGKNKVAARTCRQRRTDR 615
>U29612-3|AAA68802.2| 289|Caenorhabditis elegans Hypothetical
protein C09B8.4 protein.
Length = 289
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 168 SACLISRSSTYGGTRNV 218
S CL S SSTYGG RN+
Sbjct: 7 SHCLKSSSSTYGGIRNI 23
>AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical
protein Y116F11B.6 protein.
Length = 345
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 420 KLERKRQRNRVAASKCRRRKLE 485
K + KR+RNR+AA+K RR + E
Sbjct: 133 KAKTKRERNRIAAAKSRRLEKE 154
>AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding
protein processedisoform protein.
Length = 285
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 405 TQEKIKLERKRQRNRVAASKCRRRKLER 488
+QE+ K++R++ +NRVAA R +K ER
Sbjct: 59 SQEE-KMDRRKLKNRVAAQNARDKKKER 85
>AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding
protein unprocessedisoform protein.
Length = 287
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 405 TQEKIKLERKRQRNRVAASKCRRRKLER 488
+QE+ K++R++ +NRVAA R +K ER
Sbjct: 59 SQEE-KMDRRKLKNRVAAQNARDKKKER 85
>Z93384-1|CAB07633.3| 342|Caenorhabditis elegans Hypothetical
protein H08M01.1 protein.
Length = 342
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/56 (39%), Positives = 23/56 (41%)
Frame = +3
Query: 237 SARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMD 404
SARQ H A+ GR LD R P D P VP A PP SP D
Sbjct: 222 SARQG-HRLAIAR-GRAAPGTLDPSASRQSIPSTSDAPVLVPHAPPAPP-SPTLQD 274
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 326 HSHREGRAPDGAERGQHAAAITHRHGHSGK-DQTGEKETEES 448
HSH + G H+ A H H H GK D GE+E + +
Sbjct: 256 HSHNNKKTKKNDGHG-HSHANGHGHSHDGKSDCNGEEEPDHT 296
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 326 HSHREGRAPDGAERGQHAAAITHRHGHSGK-DQTGEKETEES 448
HSH + G H+ A H H H GK D GE+E + +
Sbjct: 214 HSHNNKKTKKNDGHG-HSHANGHGHSHDGKSDCNGEEEPDHT 254
>AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical
protein Y75B8A.35b protein.
Length = 463
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 411 EKIKLERKRQRNRVAASKCRRRK 479
EK KLERK+++NR A C + +
Sbjct: 262 EKEKLERKKEQNRANAKNCVKNR 284
>AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical
protein Y75B8A.35a protein.
Length = 480
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 411 EKIKLERKRQRNRVAASKCRRRK 479
EK KLERK+++NR A C + +
Sbjct: 279 EKEKLERKKEQNRANAKNCVKNR 301
>AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 465
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 411 EKIKLERKRQRNRVAASKCRRRK 479
EK KLERK+++NR A C + +
Sbjct: 279 EKEKLERKKEQNRANAKNCVKNR 301
>AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 463
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 411 EKIKLERKRQRNRVAASKCRRRK 479
EK KLERK+++NR A C + +
Sbjct: 262 EKEKLERKKEQNRANAKNCVKNR 284
>AF078784-2|AAK18966.1| 258|Caenorhabditis elegans Hypothetical
protein H34I24.1 protein.
Length = 258
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 336 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLERIS 494
V DE + + T LSP + + +EK +E+ + R A K + + ++
Sbjct: 32 VADEDTSTTQTSGTVTLSPAEFEEEEKKFVEKLNEYRREVAKKMKIANMNELT 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,141
Number of Sequences: 27780
Number of extensions: 290221
Number of successful extensions: 1106
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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