Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40079
(666 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 24 1.1
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 4.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 4.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.0
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 118 FPTQEIRASTFVNLARRERV 59
FP I A +F+ L RR+RV
Sbjct: 177 FPALNIVADSFIELIRRQRV 196
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 4.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 504 LPALKYVPAYVVYIW 460
L ++ +P Y++YIW
Sbjct: 537 LSSMLCIPGYMIYIW 551
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 4.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 504 LPALKYVPAYVVYIW 460
L ++ +P Y++YIW
Sbjct: 590 LSSMLCIPGYMIYIW 604
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 438 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 471
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 321 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 422
+ TPI P TV +++ PLS + + +K
Sbjct: 438 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 471
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,361
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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