Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40078
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.27 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   5.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 540 TANKFSQC*FGEEINEPGGKYIKMTG 463
           T NK ++C FG+++ E G ++I   G
Sbjct: 29  TRNKAAECVFGKQVRELGSQWIPDLG 54


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
 Frame = -1

Query: 434  YWFADRVAPWW---QRQRDLFTTPYVPCAVWRAALHCWP 327
            +W +   +PWW     +R   T P       R     WP
Sbjct: 1042 WWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWP 1080


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 408 RRHSIREPIRSLCDRPDRNPSSLYIFHQVHLFLHQINI 521
           R+  I E IR++ ++       +YIFHQ  L +    I
Sbjct: 47  RKEHIFERIRTIYNQFSTPYVGIYIFHQPVLLIRSPEI 84


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 675 TWACTFLKTKIKTMGQLKD 619
           T+ C F    IKT+  LKD
Sbjct: 346 TFTCNFEGNPIKTISWLKD 364


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,076
Number of Sequences: 336
Number of extensions: 3067
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)