Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40078
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 60 1e-09
10_08_0620 - 19321612-19323237 60 2e-09
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 42 5e-04
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 41 0.001
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 39 0.004
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 37 0.014
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 36 0.033
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 34 0.10
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 34 0.13
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 32 0.41
02_02_0737 - 13529180-13529543,13530661-13531178 31 0.95
11_06_0386 + 23012139-23012530,23012773-23012955,23013094-230131... 31 1.3
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 31 1.3
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 28 6.7
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 28 6.7
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/65 (46%), Positives = 39/65 (60%)
Frame = -3
Query: 546 HFTANKFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALC 367
HF +K EE++ K +K+ G GRT +VLVRGS+ V+ EA RSLHDALC
Sbjct: 346 HFREDKLGYADLVEEVSVGESKIVKIMGIKDMGRTATVLVRGSNQLVIDEAERSLHDALC 405
Query: 366 AVRCV 352
+R V
Sbjct: 406 VIRLV 410
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2
Query: 256 SYCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
SYC++ ++ALEVIP TLAENAGLNPI VTELR
Sbjct: 459 SYCIKEFAEALEVIPYTLAENAGLNPISIVTELR 492
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = -1
Query: 95 TDMRTEHVLQPLHVTASALALATETVRAILK 3
T++ E+V+QPL V+ SA+ LA E VR ILK
Sbjct: 512 TNILEENVVQPLLVSTSAITLACECVRMILK 542
>10_08_0620 - 19321612-19323237
Length = 541
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Frame = -3
Query: 627 LKDIET*KTLKFVLQKP*DAAQLLLWNHFTANKFSQC*FGEEINEPGG---KYIKMTGCG 457
+KD+E ++F+ K + + H +K EEI+ G K +K+TG
Sbjct: 325 VKDVER-DEIEFIT-KTLNCMPIASIEHLREDKLGHAHLVEEISVGDGNNNKIVKITGIK 382
Query: 456 QGGRTVSVLVRGSSGAVVAEAARSLHDALCAVRCV 352
GRT +VLVRGS+ V+ EA RSLHDA C +RC+
Sbjct: 383 NMGRTATVLVRGSNQMVIDEAQRSLHDAFCVIRCL 417
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Frame = -2
Query: 286 ACFSRSTRS-RSYCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
A +++ R SYC+R ++ALEVIP TLAENAGL+PI TVTELR
Sbjct: 439 AAWAKELRGMESYCVREFAEALEVIPYTLAENAGLDPISTVTELR 483
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = -1
Query: 95 TDMRTEHVLQPLHVTASALALATETVRAILK 3
T++ E+V+QPL V+ SA+ LA E VR ILK
Sbjct: 503 TNILEENVVQPLLVSTSAVTLACECVRMILK 533
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = -2
Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
Y +R+ +DAL+ IP LAEN+GL+PI+T+T ++
Sbjct: 442 YAIRSFADALDAIPLALAENSGLSPIDTLTAVK 474
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
R V++ +RG + ++ E RSLHDALC R
Sbjct: 377 RAVTIFIRGGNKMMIEETKRSLHDALCVAR 406
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = -3
Query: 531 KFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAV 361
K C EEI K I +G G + ++++RG+S V+ EA RSLHDALC +
Sbjct: 335 KLGHCNVIEEIMIGEDKLIHFSGVAMG-QACTIVLRGASEHVLDEAERSLHDALCVL 390
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = -2
Query: 259 RSYCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
+S+ + A S AL+ IP+ +A+NAGL+ E +++LR
Sbjct: 425 KSHAIDAFSRALQAIPTIIADNAGLDSAELISQLR 459
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -3
Query: 531 KFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAV 361
K C EEI + I +G + G+ ++++RG+S V+ EA RSLHDALC +
Sbjct: 312 KLGHCKVIEEIMIGEDRLIHFSGV-EMGQACTIVLRGASEHVLDEAERSLHDALCVL 367
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = -2
Query: 259 RSYCLRA*SDALEVIPSTLAENAGLNPIETVTELRGLTLLALAVAPVSTYAADELQICAR 80
+S+ + A S AL+ IP+ +A+NAGL+ + +++LR + A + + L++ R
Sbjct: 402 KSHAIEAFSRALQSIPTIIADNAGLDSADLISQLRAEHHKEQSTAGIDVISGGGLELILR 461
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -3
Query: 519 C*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
C EE ++ +GC G+T ++++RG + + EA RSLHDA+ VR
Sbjct: 348 CEVFEERQVGNERFNIFSGC-PSGQTATIVLRGGADQFIEEAERSLHDAIMIVR 400
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 229 ALEVIPSTLAENAGLNPIETVTELR 155
ALEVIP L +NAG + + + +LR
Sbjct: 444 ALEVIPRQLCDNAGFDATDVLNKLR 468
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -2
Query: 229 ALEVIPSTLAENAGLNPIETVTELRGLTLL 140
A E IP TLA+N GLN I +T+L+G +L
Sbjct: 445 AFEAIPRTLAQNCGLNVIRIMTQLQGKDML 474
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = -3
Query: 441 VSVLVRGSSGAVVAEAARSLHDALCAVR 358
VS+++RG++ ++ E RSLHDALC V+
Sbjct: 358 VSIILRGANDFMLDEIDRSLHDALCIVK 385
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -2
Query: 274 RSTRSRSYCLRA*SDALEVIPSTLAENAGLNPIETVTEL 158
+ T Y + +++ E++P TLAENAGL+ +E ++ L
Sbjct: 427 KETGLDQYAIAKFAESFEMVPRTLAENAGLSAMEIISSL 465
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2
Query: 247 LRA*SDALEVIPSTLAENAGLNPIETVTELR 155
+ A +DAL VIP TLAEN+GL+ + + L+
Sbjct: 457 VEAFADALLVIPKTLAENSGLDTQDVIVSLQ 487
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 336 MQGGAPHSARHIRRREEIALPLPPRRHSIREPIRSLCD----RPDRNPSSL 476
+QG P + R ++ P PPRRH P S C P R PS+L
Sbjct: 71 LQGRRPAESSPQPRPPQVRRPQPPRRHRSTAPSSSSCQFQAAAPSRPPSAL 121
>11_06_0386 +
23012139-23012530,23012773-23012955,23013094-23013151,
23013828-23013872
Length = 225
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 259 GSGCCERSTRETGRRCSLGSAAAGQQCRAARHTAHGT*GVVKRSRCL-CHHGATRS 423
GS C R R R C+ A + + C A T+ + G +R + C HG R+
Sbjct: 52 GSACRRRHRRGGRRGCAKNGAGSARACGARSPTSSASSGQRRRCEAVECSHGGGRA 107
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +3
Query: 357 SARHIRRREEIALPLPPRRH---SIREPIRSLCDRPDR 461
S RH R + A+P PRRH S R P R D P R
Sbjct: 630 SPRHSRASFDTAMPFTPRRHTQSSPRSPGRQFSDNPRR 667
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 348 APHSARHIRRREEIALPLPPRRHSIREPIRSLCDRP 455
AP A H+ R+ AL +PP H+ +LC P
Sbjct: 59 APFLASHLFHRDAFALTIPPPDHTAATSPCALCASP 94
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 262 SGCCERSTRETGRRCSLGSAAAGQQCRAARHTAHGT*GVVKRSRCLCHHGATRSANQYAH 441
SG E +GR S G G + RH + T KR HG+ R+AN++
Sbjct: 607 SGSVEERPYSSGRHGSSGRMEEGTAAPSCRHRSRRT---DKRPSSSGRHGSGRTANKHER 663
Query: 442 CATA 453
A A
Sbjct: 664 PAPA 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,585
Number of Sequences: 37544
Number of extensions: 385084
Number of successful extensions: 1206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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