Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40078
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  45   7e-05
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)            45   7e-05
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   40   0.003
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.045
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.079
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.079
SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.32 
SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)                       32   0.42 
SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07)                   29   5.2  
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   6.8  
SB_49508| Best HMM Match : ResIII (HMM E-Value=1.3)                    28   6.8  
SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)                      28   6.8  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      28   9.0  

>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/66 (46%), Positives = 42/66 (63%)
 Frame = -3

Query: 549 NHFTANKFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDAL 370
           +HF  +  +     EE++    K +K+TG    G TVSVLVRGS+  V+ EA RSLHDAL
Sbjct: 30  DHFNPDMLASAELVEEVSVGTSKVVKITGVSNPGNTVSVLVRGSNKLVLEEADRSLHDAL 89

Query: 369 CAVRCV 352
           C +RC+
Sbjct: 90  CVIRCL 95



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -2

Query: 268 TRSRSYCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
           T   +YC+RA ++ALE+IP TLAENAGLNPI TVTELR
Sbjct: 124 TSMDAYCVRAFAEALEIIPYTLAENAGLNPIATVTELR 161



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = -1

Query: 95  TDMRTEHVLQPLHVTASALALATETVRAILK 3
           T++  E+VLQPL V+ SA+ LA+ETVR+ILK
Sbjct: 181 TNILEENVLQPLLVSTSAVQLASETVRSILK 211


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -2

Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
           Y +RA +DAL+ IP  LAEN+GLNPI+TV +++
Sbjct: 444 YAMRAYADALDNIPLALAENSGLNPIQTVADIK 476



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -3

Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
           R V++ +RG +  +V EA RS+HDALC VR
Sbjct: 379 RAVTIFIRGGNKMIVGEAKRSIHDALCVVR 408


>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
          Length = 206

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -2

Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
           Y +RA +DAL+ IP  LAEN+GLNPI+TV +++
Sbjct: 159 YAMRAYADALDNIPLALAENSGLNPIQTVADIK 191



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -3

Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
           R V++ +RG +  +V EA RS+HDALC VR
Sbjct: 94  RAVTIFIRGGNKMIVGEAKRSIHDALCVVR 123


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = -3

Query: 531 KFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAV 361
           K   C   EE+     K I  +GC       +V++RG++  ++ EA RSLHDALC +
Sbjct: 339 KLGTCKKIEEVMIGEDKLIHFSGCALN-EACTVVIRGATQQILDEAERSLHDALCVL 394


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = -2

Query: 244 RA*SDALEVIPSTLAENAGLNPIETVTEL 158
           +A +DAL VIP TLA+N+G +P ET+ +L
Sbjct: 360 KAFADALLVIPKTLAQNSGFDPQETMVKL 388


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 244 RA*SDALEVIPSTLAENAGLNPIETVTELR 155
           +A +  LEVIP TL +N G N I T+T LR
Sbjct: 227 KAVAKGLEVIPRTLIQNCGANTIRTITALR 256


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -2

Query: 244 RA*SDALEVIPSTLAENAGLNPIETVTELR 155
           +A +  LEVIP TL +N G N I T+T LR
Sbjct: 284 KAVAKGLEVIPRTLIQNCGANTIRTITALR 313


>SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 480 YIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
           Y   +GC Q   T ++++RG +   + E  RSLHDA+  VR
Sbjct: 2   YNFFSGCKQS-TTCTIIMRGGAEQFMEETERSLHDAIMIVR 41


>SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)
          Length = 189

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 438 SVLVRGSSGAVVAEAARSLHDALCAVRCV 352
           S+++RG++  ++ E  RS+HDA+C V+ V
Sbjct: 9   SIILRGANDYMLDEMERSMHDAICVVKRV 37


>SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 361 HGT*GVVKRSRCLCHHGATRSANQYAHCATALT 459
           H   G     R L H   T +AN+Y+HC   LT
Sbjct: 37  HTPNGASPTQRILTHPTGTHTANRYSHCQRVLT 69


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 553  KKQLGCILRFLQNKFQCLSRF 615
            ++  GCILR L N FQ L+RF
Sbjct: 2134 ERSSGCILRSLVNNFQLLNRF 2154


>SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07)
          Length = 328

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 CERSTRETGRRCSLGSAAAGQQCRAARHT 357
           C RS RE G +C+LG    G  C   RHT
Sbjct: 89  CPRSYRELGGKCNLGK--EGFDCPDIRHT 115


>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 651

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 391 RCLCHHGATRSANQYA 438
           +C CHHG   SANQ+A
Sbjct: 289 QCSCHHGYVLSANQHA 304


>SB_49508| Best HMM Match : ResIII (HMM E-Value=1.3)
          Length = 666

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 363 RHIRRREEIALPLPPRRHSIR 425
           R++R R+ +ALP+PP++ + R
Sbjct: 187 RYVRERQRLALPVPPQKRTRR 207


>SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)
          Length = 685

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 363 RHIRRREEIALPLPPRRHS 419
           R++RRR+  ALP+PP + +
Sbjct: 280 RYVRRRQRFALPVPPHKRA 298


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -1

Query: 437 AYW--FADRVAPWWQRQR--DLFTT-PYVPCAVWRAALHCWPA 324
           A+W  F +++A W   Q    L T+ P V  + +RA+LH WP+
Sbjct: 652 AFWESFWEQIAQWLACQHIGSLSTSGPVVGMSAYRASLHKWPS 694


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 499  YFFTKSTLTKFVSCKMIPKKQLGCILRFLQNKFQCLSRFNI-F*LTHCFNFGLKKCTSPS 675
            Y F    L+   S K I  + LG ++R L +  QCLSR+ I     + F   L++ +   
Sbjct: 853  YKFIGICLSMLRSYKFIASQCLG-LIRSLASASQCLSRYGIDRSALNWFQSYLEERSQKC 911

Query: 676  SLRGHL 693
            S+ GHL
Sbjct: 912  SVNGHL 917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,058,500
Number of Sequences: 59808
Number of extensions: 406438
Number of successful extensions: 1212
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)