Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40078
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 70 2e-12
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 46 3e-05
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 42 4e-04
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 40 0.002
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 40 0.002
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 35 0.064
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 33 0.20
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 33 0.26
At1g19490.1 68414.m02428 bZIP transcription factor family protei... 31 0.79
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 30 1.4
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 30 1.4
At5g42620.1 68418.m05188 expressed protein 29 2.4
At5g61360.1 68418.m07699 expressed protein 28 5.6
At5g41110.1 68418.m04998 expressed protein ; expression support... 28 5.6
At4g04220.1 68417.m00598 disease resistance family protein conta... 28 5.6
At3g51350.1 68416.m05622 aspartyl protease family protein contai... 28 5.6
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 28 5.6
At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4 f... 28 7.4
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 69.7 bits (163), Expect = 2e-12
Identities = 41/92 (44%), Positives = 53/92 (57%)
Frame = -3
Query: 627 LKDIET*KTLKFVLQKP*DAAQLLLWNHFTANKFSQC*FGEEINEPGGKYIKMTGCGQGG 448
+KD+E ++FV K + + HF A K EE + GK +K+TG G
Sbjct: 323 IKDVER-DEIEFVT-KTLNCLPIANIEHFRAEKLGHADLVEEASLGDGKILKITGIKDMG 380
Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVRCV 352
RT SVLVRGS+ V+ EA RSLHDALC VRC+
Sbjct: 381 RTTSVLVRGSNQLVLDEAERSLHDALCVVRCL 412
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -2
Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
YC+++ ++ALEVIP TLAENAGLNPI VTELR
Sbjct: 446 YCVKSFAEALEVIPYTLAENAGLNPIAIVTELR 478
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -1
Query: 95 TDMRTEHVLQPLHVTASALALATETVRAILK 3
T++ E+V+QPL V+ SA+ LATE VR ILK
Sbjct: 498 TNILEENVVQPLLVSTSAITLATECVRMILK 528
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = -3
Query: 531 KFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAV 361
K C EEI K I +GC + G+ S+++RG+S V+ EA RSLHDALC +
Sbjct: 337 KLGHCKLIEEIMIGEDKLIHFSGC-EMGQACSIVLRGASHHVLDEAERSLHDALCVL 392
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -2
Query: 274 RSTRSRSYCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
++ +S+ + A S AL IP+T+A+NAGL+ E V +LR
Sbjct: 422 KTAGKKSHAIEAFSRALVAIPTTIADNAGLDSAELVAQLR 461
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -3
Query: 549 NHFTANKFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDAL 370
N+ C EE G ++ +GC GRT ++++RG + + EA RSLHDA+
Sbjct: 338 NNIIDEVLGTCEIFEEKQVGGERFNIFSGC-PSGRTATIVLRGGADQFIEEAERSLHDAI 396
Query: 369 CAVR 358
VR
Sbjct: 397 MIVR 400
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 229 ALEVIPSTLAENAGLNPIETVTELR 155
ALEVIP L +NAG + + + +LR
Sbjct: 444 ALEVIPRQLCDNAGFDATDVLNKLR 468
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = -2
Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
Y +RA ++AL+ +P LAEN+GL PIET++ ++
Sbjct: 366 YAIRAFAEALDSVPMALAENSGLQPIETLSAVK 398
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
+ V+V +RG + ++ E RS+HDALC R
Sbjct: 301 KAVTVFIRGGNKMMIEETKRSIHDALCVAR 330
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = -2
Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
Y +RA ++AL+ +P LAEN+GL PIET++ ++
Sbjct: 442 YAIRAFAEALDSVPMALAENSGLQPIETLSAVK 474
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
+ V+V +RG + ++ E RS+HDALC R
Sbjct: 377 KAVTVFIRGGNKMMIEETKRSIHDALCVAR 406
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -2
Query: 229 ALEVIPSTLAENAGLNPIETVTELRG 152
A E IP TLA+N G+N I T+T L+G
Sbjct: 443 AFEAIPRTLAQNCGVNVIRTMTALQG 468
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTEL 158
Y + +++ E +P TLA+NAGLN +E + L
Sbjct: 439 YAITKYAESFEFVPKTLADNAGLNAMEIIAAL 470
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = -3
Query: 441 VSVLVRGSSGAVVAEAARSLHDALCAVR 358
VS+++RG++ ++ E R+LHDALC V+
Sbjct: 376 VSLILRGANDYMLDEMERALHDALCIVK 403
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 235 SDALEVIPSTLAENAGLNPIETVTELRGLTLLALAVAPVSTYAADELQI 89
+DAL +IP LA NA + E V +LR A A Y++ L +
Sbjct: 445 ADALLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGLDL 493
>At1g19490.1 68414.m02428 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 471
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 308 LQRRPVSRVLLSQHPEPILLSTCLIRCSRSH 216
L + PV + + P+PIL ST LIRCSRS+
Sbjct: 114 LTKAPVKSEINGETPKPILAST-LIRCSRSN 143
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 247 LRA*SDALEVIPSTLAENAGLNPIETVTEL 158
+ A ++AL V+P TLAENAGL+ + + L
Sbjct: 440 VEAFANALLVVPKTLAENAGLDTQDVIISL 469
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 247 LRA*SDALEVIPSTLAENAGLNPIETVTEL 158
+ A ++AL V+P TLAENAGL+ + + L
Sbjct: 441 VEAFANALLVVPKTLAENAGLDTQDVIISL 470
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 434 YWFADRVAPWWQRQRDLFTTPYVPCAVWRAALHC 333
Y ADR+ W + Q F T PC +W+ A HC
Sbjct: 412 YSMADRL-DWGRNQGTQFVTS--PCNMWKGAYHC 442
>At5g61360.1 68418.m07699 expressed protein
Length = 210
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 613 NVKDIEICFAKTLGCSPIASLESFYS*QI*SMLIW*RNK 497
N +++ CF++ CS +L SFYS + + W RN+
Sbjct: 125 NFQNLVTCFSRNSLCSFSKTLRSFYSVMVIFLWWWKRNR 163
>At5g41110.1 68418.m04998 expressed protein ; expression supported
by MPSS
Length = 621
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 241 HVDNRIGSGCCERSTRETGRRCS 309
H N G+ C + RETG+RCS
Sbjct: 522 HSPNECGNKNCRETYRETGQRCS 544
>At4g04220.1 68417.m00598 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
pimpinellifolium] gi|3894389|gb|AAC78594
Length = 811
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 220 VIPSTLAENAGLNPIETVTELRGLTLLALAV-APVSTYAADEL-QICARSMCCNRFMLQL 47
+IP L ++ L PI + L GL + + + YA L + + MCCNRF +
Sbjct: 87 LIPPGLVSSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCCNRFNGSI 146
Query: 46 P 44
P
Sbjct: 147 P 147
>At3g51350.1 68416.m05622 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 646 FGLKKCTSPSSLRGHLLKYRN 708
FG KKC+SPSS+ + + Y N
Sbjct: 173 FGSKKCSSPSSICPYQISYSN 193
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 229 ALEVIPSTLAENAGLNPIETVTELR 155
+L IP LA N+GL PIET++ ++
Sbjct: 77 SLRSIPMALALNSGLQPIETLSAVK 101
>At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4
family;
Length = 648
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 472 LYIFSTRFIYFFTKSTLTKFVSCKM 546
LY+F YFFTK +TK VS +
Sbjct: 586 LYLFLYATFYFFTKLQITKLVSAML 610
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,722
Number of Sequences: 28952
Number of extensions: 283721
Number of successful extensions: 714
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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