Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40077
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 61 2e-10
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 34 0.028
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 32 0.085
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 31 0.15
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 29 1.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.4
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 27 2.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 4.2
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.7
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 9.7
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 432
+A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFG
Sbjct: 101 HAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFG 159
Query: 433 PDICGPGTKKVHVIFSYK 486
PD CG +VH IF +K
Sbjct: 160 PDKCGV-NDRVHFIFKHK 176
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 537 THLYTLIVKPDNTYEVLIDNEKVESG 614
T+LYTLIVKPD T+EV I+ + V G
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQG 226
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 33.9 bits (74), Expect = 0.028
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -1
Query: 246 SSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIEDNA 70
SSE F S+S SL P VN + S + ++ L S + S+ NF+S ++S + +
Sbjct: 478 SSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAK 534
Query: 69 SKLTTTSTT 43
S L+T STT
Sbjct: 535 SSLSTPSTT 543
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.085
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 301 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 480
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 481 YKGK 492
Y GK
Sbjct: 162 YDGK 165
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = -1
Query: 279 FELTGESIDLASS---EVFKPLSSSGSLKNFPAVNLNFPNSFP 160
F+LTGES + ++S E F+P + SL N P +N ++ ++ P
Sbjct: 674 FKLTGESSNGSNSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 306 QGFTLITERFELTGESIDLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSH 127
+ + L+ R SID S + LS+ LK +++ FP SFP +Y + +
Sbjct: 116 KSYCLVDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILN 175
Query: 126 ESS 118
+SS
Sbjct: 176 DSS 178
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 186 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 55
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 206 SDPEDDKGLKTSEDARSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 364
S+PE++K LKT E +++ SPV+ + + N S++ S ++ + T+
Sbjct: 486 SEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVLEPSSTT 538
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.6 bits (56), Expect = 4.2
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Frame = -1
Query: 477 EDYVYLLGSRTTNVRAEHNLIWSLSVHVLL-LQFAVKDLEVSASTVNVLFMFDSELDYQG 301
ED V G + + HNL+ S+ L ++D V T N+ +++LD+
Sbjct: 154 EDEVINEGLESEIDGSSHNLLDSILQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMS 213
Query: 300 FTLITERFELTGESIDLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHES 121
F+ + +I+ + + +P+S S + + P + S S + ++
Sbjct: 214 FSSVKSNSTSRLLNINGITVSMVRPISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDL 273
Query: 120 SGNFSSKNTSQFIEDN 73
S + + N S I N
Sbjct: 274 SPSQVTLNESSIISSN 289
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 107 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 250
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 104 EEKFPDDSWESNWVYS 151
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 149 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 57
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 253 VYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHG 405
+Y +SRK P L + F K DC G L+V D L+ +G
Sbjct: 959 LYEVSRKINPLHQASTRLAIAFPDKRLLQYDC--GKLQVLDRLLKDLVSNG 1007
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 221 DKGLKTSEDARSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTSRSLTANWSRRT 397
D KT D + +SS + P SSS ++ + T T + L A W R+T
Sbjct: 401 DNKSKTHLDTFEKVVDLSSKADFVEAGPSISSSGASSSAATTNSDTTEQILEAPWLRKT 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,743,828
Number of Sequences: 5004
Number of extensions: 85244
Number of successful extensions: 268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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