Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40077
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   142   3e-34
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   142   3e-34
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    68   9e-12
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    30   1.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  142 bits (344), Expect = 3e-34
 Identities = 75/149 (50%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
 Frame = +1

Query: 256 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 432
           Y+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFG
Sbjct: 70  YSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFG 129

Query: 433 PDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLN 609
           PDICGP T++VHVI +YKG+N LIKK I+      TH+ TL L N     +  +      
Sbjct: 130 PDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDGESAQ 187

Query: 610 LGDLEADWGLPSA*RKSRDPESPGNPKTW 696
            G LE DW L  A +K +DP++   P+ W
Sbjct: 188 TGSLEEDWDLLPA-KKIKDPDAK-KPEDW 214



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 28/57 (49%), Positives = 42/57 (73%)
 Frame = +2

Query: 83  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDAR 253
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAK 68


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  142 bits (344), Expect = 3e-34
 Identities = 75/149 (50%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
 Frame = +1

Query: 256 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 432
           Y+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFG
Sbjct: 70  YSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFG 129

Query: 433 PDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLN 609
           PDICGP T++VHVI +YKG+N LIKK I+      TH+ TL L N     +  +      
Sbjct: 130 PDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDGESAQ 187

Query: 610 LGDLEADWGLPSA*RKSRDPESPGNPKTW 696
            G LE DW L  A +K +DP++   P+ W
Sbjct: 188 TGSLEEDWDLLPA-KKIKDPDAK-KPEDW 214



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 28/57 (49%), Positives = 42/57 (73%)
 Frame = +2

Query: 83  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDAR 253
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAK 68


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
 Frame = +1

Query: 256 YALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIM 426
           +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T Y IM
Sbjct: 121 HAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIM 180

Query: 427 FGPDICGPGTKKVHVIFSYK 486
           FGPD CG  T KVH+IF YK
Sbjct: 181 FGPDKCG-ATGKVHLIFRYK 199



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 525 DDVYTHLYTLIVKPDNTYEVLIDNEKVESG 614
           DD  THL+TL+VKP   Y V +D + +  G
Sbjct: 223 DDHNTHLFTLVVKPTGEYSVSVDGKSLYYG 252


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 285 ERFELTGESIDLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQ 139
           E   +T  S+ L +  V   +S    L  +  ++ +F  SFP C LYT+
Sbjct: 349 ENDSITEMSVQLTTYGVNPAISMDRRLSRYSRISCSFHFSFPSCLLYTK 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,947,547
Number of Sequences: 27780
Number of extensions: 500785
Number of successful extensions: 1451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)