Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40076
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    89   1e-18
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.5  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    27   3.5  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   4.7  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    26   6.1  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   6.1  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 37/56 (66%), Positives = 48/56 (85%)
 Frame = +1

Query: 49  PDAKETGLAHLCEFIEDCEHVTLAVRILHVLGREGPKARQPSRYIRYIYNRVILES 216
           P++KE  LA LCEFIEDCE+  +AVRIL +LG EGPKA +P+R+IRYIYNR++LE+
Sbjct: 449 PESKERALAELCEFIEDCEYPKIAVRILSILGEEGPKASEPTRFIRYIYNRIMLEN 504



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = +3

Query: 285 NIRVLLSRCQLDEDDEVRDRAVFYSAILDSGNPQLINDYIINIQVPNPVLLEKSLSDYLA 464
           +++V+L+RC  D DDEVRDRA F    L+  +  L    + + ++P+   LE+SL  Y++
Sbjct: 530 SVKVILTRCLEDADDEVRDRAAFSVKALEDRDAFL--PVVKSDKIPSLPALERSLVIYIS 587

Query: 465 SGDQSEPFNIAAVPTLKNHK-SLKNLPLR 548
                + F+I +VP L   +   +NL ++
Sbjct: 588 ERKFGQGFDIKSVPVLSQEEIDAENLRIK 616


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = +3

Query: 447 LSDYLASGDQSEPFNIAAVPTLKN------HKSLKNLPL 545
           +S + +S + SEPF +++VP   N      H S  +LP+
Sbjct: 445 ISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 743 NLDSPGLKSL*NPLRGPNFSRKGFKVP 823
           +++ PGL  + NPLRGPN    G + P
Sbjct: 154 HINFPGLAGM-NPLRGPNAHEFGVRFP 179


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 422  ESGTIRKVVE*LSCFRRSKRALQHR--GGSHAEEP 520
            E+ T+RKVV+  S FR+  +AL H   G + AE P
Sbjct: 1176 ETETLRKVVDLASKFRQEMQALAHNPFGLTMAEVP 1210


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 864 LKNFGTPGLGKFGAGTLNPFREKFGPLKGFYKLFKPGESKLAGAEK 727
           L   G  GL   G  TL  +  +     GFY+LFK   S L GA+K
Sbjct: 69  LSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQK 114


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +2

Query: 119 LCVFCMS----WDEKGQKHANLLGTLDTFI 196
           L +FC+S    W++ GQK+++L   +D FI
Sbjct: 481 LQLFCLSIIKRWNQTGQKYSDLRDIVDDFI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,915
Number of Sequences: 5004
Number of extensions: 78028
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)