Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40076
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   5e-23
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     30   2.8  
SB_49278| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   8.7  
SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_6088| Best HMM Match : THAP (HMM E-Value=0.00037)                   28   8.7  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  105 bits (252), Expect = 5e-23
 Identities = 45/57 (78%), Positives = 52/57 (91%)
 Frame = +1

Query: 46  NPDAKETGLAHLCEFIEDCEHVTLAVRILHVLGREGPKARQPSRYIRYIYNRVILES 216
           N +AKETGL+HLCEFIEDCEH  LA RILH+LGREGP+++QP RYIRYIYNRVILE+
Sbjct: 346 NGEAKETGLSHLCEFIEDCEHTVLATRILHLLGREGPRSQQPGRYIRYIYNRVILEN 402


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 836 GNLGPEL*TLSGKNLGPLKG--FTSFSNRGNPN 744
           GNLG  L +LS + LGP +   F+ F N+  PN
Sbjct: 396 GNLGERLSSLSDQELGPKRADTFSGFDNKLKPN 428


>SB_49278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -2

Query: 351 IRRDHELRRLHLVGSVTTKPLYLAATQDGRLRTSNSRYCSSPNWT*LQNHSVINVSNVPR 172
           +R+  ++ RL LV  +  + + L +T DG  R   S YC  P    L NH  + V  +  
Sbjct: 139 LRQADKVWRLDLVMVILFRGIPLEST-DGE-RLGKSEYCRHPGLCVLPNHITVTVRELDL 196

Query: 171 RLACF 157
            LA F
Sbjct: 197 FLANF 201


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 633 GALYSKLWRSHLTFTETRK 689
           GA++SK WR H  FT  +K
Sbjct: 109 GAMFSKTWRVHQIFTNVKK 127


>SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 455 LSCFRRSKRALQHRGGSHAEEPQEPKESPVEI*TRKAPVVSREGQ 589
           L C RR+K A   R  SHA  P     SP  + T+ A + +  G+
Sbjct: 677 LLCIRRTKNAATARMSSHAFSPGNFTASPAALNTKFAMLPTSPGR 721


>SB_6088| Best HMM Match : THAP (HMM E-Value=0.00037)
          Length = 118

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 91  IEDCEHVTLAVRILHVLGREGPKARQPSRYIR 186
           IEDCE+     + LH+  + GPK  +  R++R
Sbjct: 23  IEDCENNQKTGKSLHLSQKSGPKKAEWIRFVR 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,903,550
Number of Sequences: 59808
Number of extensions: 594809
Number of successful extensions: 1390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)