Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40076
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 431 YRIRYLNVNDVIVDQL 384
           Y I YL+++DV+ D L
Sbjct: 423 YWIIYLHISDVVADDL 438


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 431 YRIRYLNVNDVIVDQL 384
           Y I YL+++DV+ D L
Sbjct: 423 YWIIYLHISDVVADDL 438


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 803 GKNLGPLKGFTSFSNRGNPNWPGPKNG 723
           GKN+G  + FTS  N     +  PK+G
Sbjct: 153 GKNIGMKRIFTSSQNIAVIEYRIPKSG 179


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 486 FNIAAVPTLKNHKSLKNLPLRFKHV 560
           FN+ A   +K+  + K + LRF +V
Sbjct: 537 FNVNATKQIKDEANKKGVSLRFYNV 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,039
Number of Sequences: 438
Number of extensions: 5706
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)