Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40076
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...    88   6e-18
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi...    29   5.4  
At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing ...    28   7.2  
At1g13170.1 68414.m01527 oxysterol-binding family protein simila...    28   7.2  
At5g56240.1 68418.m07018 expressed protein                             28   9.5  
At5g47230.1 68418.m05824 ethylene-responsive element-binding fac...    28   9.5  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 39/56 (69%), Positives = 44/56 (78%)
 Frame = +1

Query: 49  PDAKETGLAHLCEFIEDCEHVTLAVRILHVLGREGPKARQPSRYIRYIYNRVILES 216
           PDAKE+GL HLCEFIEDCE   L+ +ILH LG EGP    PS+YIRYIYNRV LE+
Sbjct: 434 PDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPNTSDPSKYIRYIYNRVHLEN 489



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
 Frame = +3

Query: 255 FGASRPELLPNIRVLLSRCQLDEDDEVRDRAVFYSAILDS----GNPQLINDYII-NIQV 419
           FG     L P I VLL RC  D DDEVRDRA  Y ++L         +   D++  +++V
Sbjct: 503 FGFMVESLKPRITVLLKRCIYDSDDEVRDRATLYLSVLGGDGTVDTDKESKDFLFGSLEV 562

Query: 420 PNPVLLEKSLSDYLASGDQSEPFNIAAVPTLKNHKSLKNLPLRFK 554
           P  V +E SL +Y  S    E F+I +VP     K +K+ PL  K
Sbjct: 563 P-LVNMETSLKNYEPS---EEAFDINSVP-----KEVKSQPLAEK 598


>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
           to alanine aminotransferase 2 SP|P34106 from Panicum
           miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
           from Oryza sativa
          Length = 540

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 366 LDSGNPQLIN-DYIINIQVPNPVLLEKSLSDYLASGDQSEPFNIAAVPTLKNHKSLKNLP 542
           LDS NP+++  +Y +  ++ N   + + L + L +   + PF+      + N +SL  LP
Sbjct: 65  LDSINPKVLKCEYAVRGEIVN---IAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQLP 121

Query: 543 LRF 551
           ++F
Sbjct: 122 IKF 124


>At1g29160.1 68414.m03568 Dof-type zinc finger domain-containing
           protein similar to ascorbate oxidase promoter-binding
           protein GB:D45066 GI:853689 from [Cucurbita maxima]
          Length = 175

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 298 KTLIFGSNSGREAPNEQQQILQQPELDLT 212
           KT+ F +N  +    E+QQ  QQPEL  T
Sbjct: 14  KTITFNANITQTIKKEEQQQQQQPELQAT 42


>At1g13170.1 68414.m01527 oxysterol-binding family protein similar
           to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
           cuniculus}; contains Pfam profiles PF00169: PH domain,
           PF01237: Oxysterol-binding protein
          Length = 816

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 536 SPVEI*TRKAPVVSREGQYTEQLQAIPWNRETWGPLFKTLA 658
           +PV I  R  PVV++   +   L+AIP ++    P F T A
Sbjct: 8   APVSIDDRTNPVVAKSSNHHLGLEAIPVSKHASKPSFSTQA 48


>At5g56240.1 68418.m07018 expressed protein 
          Length = 986

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 186 SNVPRRLACFWPFSSQDMQ--NTHS*SDMFTIFNKFTQVS 73
           SN    +   WPFSS+ +Q  +TH  ++    F KF+ VS
Sbjct: 47  SNRKNNIKNNWPFSSKSLQLFSTHGVTNPLPPFQKFSTVS 86


>At5g47230.1 68418.m05824 ethylene-responsive element-binding factor
           5 (ERF5) identical to SP|O80341 Ethylene responsive
           element binding factor 5 (AtERF5) [Arabidopsis thaliana]
          Length = 300

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = -1

Query: 304 DNKTLIFGSNSGREAPNEQQQILQQPE-LDL-TPKSL 200
           D+ ++IFGS+S   AP +  + + +PE +DL TP+S+
Sbjct: 43  DSSSIIFGSSSSSFAPIDFSESVCKPEIIDLDTPRSM 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,077,583
Number of Sequences: 28952
Number of extensions: 424550
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)