Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40075
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0087 + 574623-574687,574797-574871,574987-575101                 34   0.17 
08_01_0118 + 947394-947885,948709-948810,948914-949219,949557-94...    30   2.1  
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273...    29   4.8  
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168...    29   4.8  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     28   8.3  

>05_01_0087 + 574623-574687,574797-574871,574987-575101
          Length = 84

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 601 GKCSCNKQKCGIVCSGC*MCT 663
           G C CN  KCG  CSGC  C+
Sbjct: 62  GGCGCNTCKCGTSCSGCSCCS 82


>08_01_0118 +
           947394-947885,948709-948810,948914-949219,949557-949616
          Length = 319

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 629 HFCLLHEHLPKWELNPQHLTWQSS 558
           H+ LLH HLP   L+P+HL+  SS
Sbjct: 6   HYALLHHHLPN-PLHPRHLSSSSS 28


>04_04_1619 -
           34825922-34825998,34826109-34826200,34827281-34827399,
           34827507-34827734,34827904-34828164,34828258-34828614,
           34828803-34828916,34828990-34829063,34829176-34829359,
           34829685-34829830,34829951-34830309,34835569-34835789
          Length = 743

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 556 RLDCHVKCCGFNSHLGKCSCNKQKCG 633
           R DC+  CC ++  LGK +C+   CG
Sbjct: 411 RNDCNTDCCSYDLKLGKVNCD-NCCG 435


>04_04_1617 -
           34815889-34816080,34816185-34816412,34816591-34816851,
           34816943-34817299,34817466-34817579,34817653-34817726,
           34817839-34818022,34818349-34818494,34818628-34818986,
           34819912-34820132
          Length = 711

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 556 RLDCHVKCCGFNSHLGKCSCNKQKCG 633
           R DC+  CC ++  LGK +C+   CG
Sbjct: 411 RNDCNTDCCSYDLKLGKVNCD-NCCG 435


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 601 GKCSCNKQKCGIVCSGC*MC 660
           G C CN  KCG  C GC  C
Sbjct: 59  GSCGCNTCKCGTSC-GCSCC 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,097,071
Number of Sequences: 37544
Number of extensions: 426148
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)