Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40075
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear recep...    28   7.4  
AY204184-1|AAO39188.1|  353|Caenorhabditis elegans nuclear recep...    28   7.4  
AC006655-3|AAF39874.1|  208|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical
           protein C28D4.1 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 451 KEIIKKYLIFSVGYHWFAFISIENSC 374
           KE++ K+ +  VG+ W+A+ S E  C
Sbjct: 235 KELLVKFSLMPVGWLWYAYKSYEYRC 260


>AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 451 KEIIKKYLIFSVGYHWFAFISIENSC 374
           KE++ K+ +  VG+ W+A+ S E  C
Sbjct: 235 KELLVKFSLMPVGWLWYAYKSYEYRC 260


>AY204184-1|AAO39188.1|  353|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 451 KEIIKKYLIFSVGYHWFAFISIENSC 374
           KE++ K+ +  VG+ W+A+ S E  C
Sbjct: 151 KELLVKFSLMPVGWLWYAYKSYEYRC 176


>AC006655-3|AAF39874.1|  208|Caenorhabditis elegans Hypothetical
           protein H10D18.2 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 505 FDQSVGTVTDFAVH*LSRLDCHVKCCGFNSHLGKCSCNKQKCGIVC 642
           FD  +G  T  A    +++ C VK CG +S +     N  K  +VC
Sbjct: 130 FDSGIGHATQMAWAETNKIGCGVKNCGKDSSMN----NMYKVAVVC 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,468
Number of Sequences: 27780
Number of extensions: 411809
Number of successful extensions: 1032
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)