Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40075
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 650  HPEHTIPHFCLLHEH 606
            HP +T+ H  + HEH
Sbjct: 1731 HPNNTLLHSFMYHEH 1745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 650  HPEHTIPHFCLLHEH 606
            HP +T+ H  + HEH
Sbjct: 1727 HPNNTLLHSFMYHEH 1741


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 629 VGLCALGVECVRTKC 673
           +G+CA G++C   KC
Sbjct: 76  LGICAEGMQCSCNKC 90


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 705 ANSHRHYNFLLHFVRTHSTPRAHN 634
           A  H H++        HSTP AH+
Sbjct: 428 ATPHHHHSHAATPHHQHSTPLAHS 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,316
Number of Sequences: 438
Number of extensions: 5200
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)