Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40072
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 29 0.60
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz... 27 3.2
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.2
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 27 4.2
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 4.2
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 5.6
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 7.4
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 7.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.4
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 7.4
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 9.7
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 9.7
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -1
Query: 762 YHLRQKFVSRVGITLSFSVASSIPEGVVGSFFSLGFPVLQSLPLELMS 619
++L++KF+SR L+ +V + V GSF PVL++L E+ S
Sbjct: 134 WNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTS 181
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 13 HVYPRKCSHRVSLRFSSLSPVSQR*RLCLPGTKKLSRTR 129
H+ P K SH +SL + S +SQ + T+KL+RT+
Sbjct: 19 HLRP-KSSHSISLGYLSKEKISQEEMQIIRATQKLARTK 56
>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 1|||Manual
Length = 93
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 231 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 136
PM+TK+G ++KG G++ HG V WS V
Sbjct: 14 PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +3
Query: 555 KDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNRPRPPESMKRQKKTT 722
K+E E + E + Q P + PAV T A T+ P R K T
Sbjct: 425 KEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPNKFT 480
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Frame = +2
Query: 515 ARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGNPR-----EKKEP 679
A+ + W + + ++CR G + S D +D STG +K +
Sbjct: 45 AQISLVEQWSTKRHKKSCRNISVNESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKE 104
Query: 680 TTPSGIDEATEKDNVIPTRETNFCL 754
+P + + E D V T + N C+
Sbjct: 105 ISPYSVVQWIENDMVFATGDDNGCV 129
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 160 WERELVICNGDGCAITSLS 104
WE + +C+ GCA+ SL+
Sbjct: 71 WENDNAMCSNQGCAVKSLN 89
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 501 NENTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNR 680
++ TE VP E AP +EP E TV+ +D + +AP V E + ++K +
Sbjct: 50 DDATENAVP-AEVQAP---EEPKEPETVDNIDPADDDPNSVAAPKV----EEKKSKKKAK 101
Query: 681 PRPP 692
P
Sbjct: 102 DEKP 105
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 575 DDSRNLGRFYDSGAEDISSSGSDCSTGNPREKKEPTTPSGIDEATEKDNVIPTRETNFCL 754
D S+NL Y+ + + S + + + P +P +D A+E+D IP+ +++ L
Sbjct: 376 DPSKNL---YERSVKTAAELASLQNVTETTDNEIPNSPDFLDAASEEDEHIPSLDSSSLL 432
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 125 PVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 220
P +ITDD P N L +PL W +I ++
Sbjct: 1059 PYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 18 ISKKMFSPRLFAVFIAFAGFATVTALPARDKEVIAHPSPLQ 140
++KK P L F+A T +A P K I P P++
Sbjct: 668 LTKKSSFPALLKGFLALPATVTTSANPLGFKSTIQRPIPIK 708
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 546 PYKKDEPVEKTTVETLDVSTTQEP-KTSAPAVVTAAPET 659
PY+ V V T V + P +T+AP+ TA P+T
Sbjct: 765 PYQTQPSVTNNNVATQPVIASTVPVQTAAPSSQTAVPQT 803
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 213 GISFHKGANRLNGERFSHGNVNWSSVMETGAR 118
G+ F+ GA E + N +W +++++GAR
Sbjct: 400 GVEFYVGAASSEVEAAAQKNGDWQTLIDSGAR 431
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 543 APYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNRPRPPE 695
+P P+ +T TLD S P S PAV++ + N P PP+
Sbjct: 273 SPQPYSGPILASTAPTLDGSYLSNPSNSNPAVMSLS-------SNFPSPPK 316
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 392 KNWLANTSWSSSLASCDPWTKIKS 321
+ W+ N+S S L CD KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 603 TTQEPKTSAPAVVTAAPETRGRRKNRPRPPESMKRQKKTT*FPHG 737
TT++ A + +A +G R + RP + KRQKK + G
Sbjct: 246 TTEDDFDIALSSASADTFKKGSRSTKSRPQPNPKRQKKNEKYGFG 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,762
Number of Sequences: 5004
Number of extensions: 57183
Number of successful extensions: 217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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