Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40071
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    29   5.9  
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    29   5.9  

>12_01_0818 +
           7524549-7524747,7524855-7525863,7525964-7526108,
           7526206-7526295,7526404-7526553,7527333-7528094,
           7528177-7528496,7528581-7528707,7528792-7528959,
           7529054-7530466,7530563-7530823,7530983-7531144,
           7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 368 SLQYVRNTSLCEQNK-KGIDLFGYFD 294
           S Q++RN ++CEQ+    I  +GYFD
Sbjct: 746 SSQHIRNQAICEQSHLSRITYYGYFD 771


>09_02_0203 -
           5746068-5746307,5746469-5746729,5746833-5748239,
           5748588-5748714,5748800-5749119,5749202-5749963,
           5750749-5750898,5751007-5751096,5751196-5751340,
           5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 368 SLQYVRNTSLCEQNK-KGIDLFGYFD 294
           S Q++RN ++CEQ+    I  +GYFD
Sbjct: 701 SSQHIRNQAICEQSHLSRITYYGYFD 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,603
Number of Sequences: 37544
Number of extensions: 326264
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)