Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40071
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 466 PLYRY*NVITFITRCYSISITQTRMGL 386
           PLY    +I F+     I +  TRMGL
Sbjct: 211 PLYELSTIIFFLIPMLIILVVYTRMGL 237


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 NKMLFNFHNTNTNGSCTP*NRSLQYV 354
           N   +N++N N N +C     ++ Y+
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 NKMLFNFHNTNTNGSCTP*NRSLQYV 354
           N   +N++N N N +C     ++ Y+
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 NKMLFNFHNTNTNGSCTP*NRSLQYV 354
           N   +N++N N N +C     ++ Y+
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 NKMLFNFHNTNTNGSCTP*NRSLQYV 354
           N   +N++N N N +C     ++ Y+
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,210
Number of Sequences: 438
Number of extensions: 4672
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)