Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40070
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   147   2e-36
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   6.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   6.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.7  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.9  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   8.9  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   8.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  147 bits (356), Expect = 2e-36
 Identities = 63/85 (74%), Positives = 78/85 (91%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRG
Sbjct: 68  VDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRG 126

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AII+ KLS++P+RRGYWG  +G PH
Sbjct: 127 AIIMGKLSIMPIRRGYWGTALGDPH 151



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 27/41 (65%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIV 68



 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 31/70 (44%), Positives = 42/70 (60%)
 Frame = +1

Query: 511 VPCKVTGKCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLVVQLAPWENLLK 690
           VP KV+GKCGSVT+RL+PAPRG G+V+AP+ K+   +     D   Q         N +K
Sbjct: 153 VPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRF-LQLAGIEDCYTQSRGSTKTLGNFVK 211

Query: 691 PTYAAIAKTY 720
             +AA + TY
Sbjct: 212 AAFAAASLTY 221


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 642 SIPVHQPSERKLLRNWRRHNSSTTRGRNQPNCYRTTLAGDLARD 511
           SIP+H PS R + R  R H +  +R    P      +  D A D
Sbjct: 554 SIPIHYPSSR-VSRRHRFHRALRSRFSRSPKKSSVKIVVDNAND 596


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -2

Query: 299 SLEPHHSGTGRGRNQDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 147
           +L PHH  TG  + +    +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 369 NLLPHHR-TGT-KYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 601 PKKLSFRWLVYRDATPQLVVQL 666
           P++  F+WL+   ATP+L+V L
Sbjct: 67  PERSVFQWLIALTATPRLLVLL 88


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 460 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 326
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 492 RSESHTRPLQGHRQVWFCNNSADSCPSWYWN 584
           +S +    L G  +   C   + SCPS++WN
Sbjct: 151 QSRADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 274 RAEEEIKISNSLIGKENK*MLSSLSIFPSRTR 179
           R+EE+I+++NSL+ K N   +  LSI   R +
Sbjct: 225 RSEEQIQLANSLLQKLNACKILFLSIKKRRIK 256


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 575 VLELCLRQFLRSFLSDGWCTGMLHLSSWFNWHLGKI 682
           V+   +  F+ S LS  WC     LSSWFN  L K+
Sbjct: 44  VISYAVLYFVNSLLS--WCM----LSSWFNSKLSKL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,466
Number of Sequences: 5004
Number of extensions: 68843
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)