Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40070
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 155 5e-38
07_01_0756 + 5819367-5820038,5820847-5821005 152 3e-37
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 48 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 42 4e-04
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 29 3.0
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.0
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.0
04_04_0981 + 29912275-29912814 28 7.0
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (375), Expect = 5e-38
Identities = 70/81 (86%), Positives = 76/81 (93%)
Frame = +2
Query: 266 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 445
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 446 AKLSVLPVRRGYWGNKIGKPH 508
AKLSV+PVRRGYWGNKIG+PH
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPH 161
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 511 VPCKVTGKCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLVVQLAPWENLLK 690
VPCKVTGKCGSVT+R++PAPRG+GIV+A +PKK+ ++ D N +K
Sbjct: 163 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIEDVFTSSRGSTKTLGNFVK 221
Query: 691 PTYAAIAKTYA--*PDFF 738
T+ + KTY PDF+
Sbjct: 222 ATFDCLMKTYGFLTPDFW 239
Score = 62.1 bits (144), Expect = 5e-10
Identities = 24/41 (58%), Positives = 36/41 (87%)
Frame = +3
Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I+
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIV 78
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 152 bits (368), Expect = 3e-37
Identities = 69/81 (85%), Positives = 75/81 (92%)
Frame = +2
Query: 266 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 445
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 446 AKLSVLPVRRGYWGNKIGKPH 508
AKLSV+PVRRGYWGNKIGKPH
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPH 164
Score = 71.3 bits (167), Expect = 8e-13
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLVVQLAPWE 678
K VPCKVTGKCGSVT+R++PAPRG+GIV+A +PKK+ ++ D
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKV-LQFAGIEDVFTSSRGSTKTLG 220
Query: 679 NLLKPTYAAIAKTYA--*PDFF 738
N +K T+ + KTY PDF+
Sbjct: 221 NFVKATFDCLMKTYGFLTPDFW 242
Score = 62.1 bits (144), Expect = 5e-10
Identities = 25/41 (60%), Positives = 36/41 (87%)
Frame = +3
Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I+
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIV 81
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +2
Query: 251 DLDFFLGPS--LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATA 424
D+D PS ++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV A
Sbjct: 159 DMDREQRPSDEFSERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEA 218
Query: 425 IRGAIILAKLSVLPV 469
I A + + +++ V
Sbjct: 219 ITKAAMNGRRNLVTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 496 RKATPVPCKVTGKCGSVTIRLIPAPRGTGIVSAPIPKKL 612
RK V CKV K GSVT+R++ P G+ +V+ +PKK+
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKV 84
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 353 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 448
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 618 QMAGVQGCYTSARGSTGTLGKFAK 689
+ AG++ +TS+RGST TL F K
Sbjct: 86 KFAGIEDVFTSSRGSTKTLSNFVK 109
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -3
Query: 292 NLIIQGRAEEEIKISNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSFWSS 137
N +I RAE ++K+S+S+IG+E+ + + S++ G H F +S
Sbjct: 399 NNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLFDTS 450
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 415 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 299
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -3
Query: 523 PCKGRVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 359
P + VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 103 PRRTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>04_04_0981 + 29912275-29912814
Length = 179
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 574 GTGIVSAPI-PKKLSFRWLVYRDATPQLVVQLAPWENLLKPT--YAAIAKTYA*PDFFXW 744
G GIV PK +F W+ +R AT VV++ L + + A +T A P W
Sbjct: 93 GRGIVVRDERPKSRAFGWVSFRKATSDRVVEVDDGAALARSSSVSATAVETRAPPKSRGW 152
Query: 745 WR*IP 759
R IP
Sbjct: 153 GRFIP 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,246,915
Number of Sequences: 37544
Number of extensions: 523824
Number of successful extensions: 1477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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