Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40070
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 143 1e-34
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 4.7
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 4.7
AC006791-4|AAM97974.1| 603|Caenorhabditis elegans Metabotropic ... 29 4.7
AC006791-3|ABM01864.1| 906|Caenorhabditis elegans Metabotropic ... 29 4.7
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ... 29 4.7
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ... 29 4.7
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 6.3
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 6.3
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 6.3
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 6.3
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 6.3
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 143 bits (347), Expect = 1e-34
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +2
Query: 275 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 454
+L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97 NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156
Query: 455 SVLPVRRGYWGNKIGKPH 508
+V+PVRRGYWGNKIG PH
Sbjct: 157 AVVPVRRGYWGNKIGLPH 174
Score = 79.0 bits (186), Expect = 3e-15
Identities = 40/71 (56%), Positives = 45/71 (63%)
Frame = +1
Query: 511 VPCKVTGKCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLVVQLAPWENLLK 690
VPCKVTGKC SV +RLIPAPRGTGIVSAP+PKKL D A N K
Sbjct: 176 VPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKL-LHMAGIEDCYTAAKGSTATLGNFAK 234
Query: 691 PTYAAIAKTYA 723
TYAA+ +TY+
Sbjct: 235 ATYAALQRTYS 245
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +3
Query: 138 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEI+
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEII 91
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +1
Query: 469 SKRLLG*QDRKATPVPCKVTGKCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATP 648
S R++ +DR P+ +TG G + + P GT S P P KL + + D+TP
Sbjct: 290 SPRMIKPEDRP--PLIRPMTGAGGGRPMTSMGRP-GTA-ASRPAPPKLKKKQIATVDSTP 345
Query: 649 QLVVQL 666
Q+VV+L
Sbjct: 346 QVVVEL 351
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 543 CNNSADSCPSWYWNCVCANS 602
C +SA SC SW N C NS
Sbjct: 187 CTDSASSCSSWAANGFCTNS 206
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 478 TSSNW*NRQLSKDNSASNGSG 416
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AC006791-4|AAM97974.1| 603|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform b protein.
Length = 603
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 611 SFLGIGADTIPVPRGAGISRIVTEPHLPVTLQGTGVAFRSCYPSNLFELVK 459
S+ GA+ PR A SR+V +L + V F S + S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>AC006791-3|ABM01864.1| 906|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform c protein.
Length = 906
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 611 SFLGIGADTIPVPRGAGISRIVTEPHLPVTLQGTGVAFRSCYPSNLFELVK 459
S+ GA+ PR A SR+V +L + V F S + S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform a protein.
Length = 1042
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 611 SFLGIGADTIPVPRGAGISRIVTEPHLPVTLQGTGVAFRSCYPSNLFELVK 459
S+ GA+ PR A SR+V +L + V F S + S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform d protein.
Length = 1044
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 611 SFLGIGADTIPVPRGAGISRIVTEPHLPVTLQGTGVAFRSCYPSNLFELVK 459
S+ GA+ PR A SR+V +L + V F S + S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1125 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1176
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1416 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1467
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1431 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1482
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1431 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1482
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1125 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1176
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1416 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1467
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1431 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1482
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 532 KCGSVTIRLIPAPRGTGIVSAPIPKKLSFRWLVYRDATPQLV-VQLAPWENLLKP 693
K G +R++P P GT ++S PK LS + L + +T ++ ENL+ P
Sbjct: 1431 KSGKTPLRIVPEPTGTPLLS---PKILSPKHLSPKTSTSSTKRSSISDHENLISP 1482
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 435
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 435
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,028,379
Number of Sequences: 27780
Number of extensions: 412740
Number of successful extensions: 1218
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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