Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40069
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.21 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.21 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 108 ILFDSPLTLILGQNGCGKTTIIECLRY 188
           + +   L  ILG +G GKTT++  L +
Sbjct: 100 VAYPGELLAILGSSGAGKTTLLNTLTF 126


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 108 ILFDSPLTLILGQNGCGKTTIIECLRY 188
           + +   L  ILG +G GKTT++  L +
Sbjct: 100 VAYPGELLAILGSSGAGKTTLLNTLTF 126


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNL-KLLEQEVAHLTE 684
           PL  G+  +E FDE  +A   +  +D +  IR+    NL KL++Q  A   E
Sbjct: 430 PLLAGQLGREFFDEKLNALCMTWLMDHVFAIREAATLNLRKLVDQFGAEWAE 481


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 364 KISNPGFFSFYC 399
           K +NPG++ F+C
Sbjct: 593 KATNPGYWLFHC 604


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 364 KISNPGFFSFYC 399
           + +NPGF+ F+C
Sbjct: 660 RANNPGFWLFHC 671


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,850
Number of Sequences: 336
Number of extensions: 4034
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)