Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40069
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 83 5e-17
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 33 0.033
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.41
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 0.94
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 28 1.2
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 28 1.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 28 1.2
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 28 1.6
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 1.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.2
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 2.9
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 2.9
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 27 3.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 3.8
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 26 5.0
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 26 6.6
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 26 6.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 8.8
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 25 8.8
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 8.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.8
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 8.8
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 8.8
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 82.6 bits (195), Expect = 5e-17
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ + ++I GIRSF ++ + I F SPLTLI+GQNG GKTTIIECL+YA TG +PP
Sbjct: 1 MSCIDRMSIMGIRSF--DNRSRESIQFFSPLTLIVGQNGSGKTTIIECLKYATTGILPPN 58
Query: 216 SRNECFVHDAKV 251
++ F+HD K+
Sbjct: 59 TKGGAFIHDPKI 70
Score = 63.3 bits (147), Expect = 4e-11
Identities = 27/74 (36%), Positives = 46/74 (62%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQE+S WPL E +K+RFDEIF++ +Y+ LD++K +++D +K+ + + H
Sbjct: 155 CHQEESFWPLSEPANLKKRFDEIFESLRYAKALDQIKGLKRDQETQVKVDQATLTHYRSD 214
Query: 688 KPDLDQEKLNVVNS 729
K ++ +L V S
Sbjct: 215 KERAEKIELRVHES 228
Score = 55.2 bits (127), Expect = 9e-09
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 EVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQ-TLDSFLSTVDESGKTKDVSSRC 439
EVL QVKL N ++ TRS++++ KK T+ Q TLD L + ++ +T +S+RC
Sbjct: 75 EVLAQVKLAFRNTNQVKMICTRSLQLSV--KKTTRQQKTLDGQLLILKDNERTT-ISNRC 131
Query: 440 ADLDILMHEELGVSKAILNSVVF 508
A+LD + LGVSKA+L+ V+F
Sbjct: 132 AELDSQVPLSLGVSKALLDYVIF 154
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 33.5 bits (73), Expect = 0.033
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 553 VKERFDEIFDADKYSDCLDRLKKIR--KDYAQNLKLLEQEVA---HLTEKKPDLDQEKLN 717
+KE DE+ D +YS C + K+IR D+ + KL +A H+ +K D+D E L+
Sbjct: 245 LKETVDELIDILRYSPCTHQ-KRIRSVSDFERRWKLWRSRLANLRHVVKKHRDIDSEVLD 303
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.41
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 135 ILGQNGCGKTTIIECL-RYAITGQMPPGSRNECFV 236
++G NGCGK+T++ + Y + P CFV
Sbjct: 475 VVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCFV 509
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 111 LFDSP-LTLILGQNGCGKTTIIECL 182
LF P L LI+G NG GK+TI+ +
Sbjct: 29 LFPGPYLNLIIGPNGTGKSTIVSAI 53
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 123 PLTLILGQNGCGKTTIIECLRYAITG 200
P +I G G GKTT I CL +A+ G
Sbjct: 55 PHLVISGMPGIGKTTSILCLAHALLG 80
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 517 EDSSWPLDEGKKVKERFDEIFDADKYSDCLD-RLKKIRKDYAQNLKLLEQEVAHLTEKKP 693
+DSS P + K + D L+ + ++ + AQ K + V+HL
Sbjct: 177 QDSSRPGRYSYRTKSASPALIDTSTLDSRLNFTMGRLERSIAQLSKNTMRAVSHLENPPK 236
Query: 694 DLDQEKLNVVNS 729
D+ KLNV NS
Sbjct: 237 DITLPKLNVKNS 248
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRY 188
+T++LG GCGKTT I Y
Sbjct: 43 ITIVLGHTGCGKTTQIPQFLY 63
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -3
Query: 414 LPLSSTVERKESRV*NFVFFLAKAVTFMDLVTSNCLSFALTIFNFT*PSTSVDHSLLHH- 238
LP+SST + K+SR + LAK +F+ +++ + + N PS +V + L+H
Sbjct: 116 LPMSSTKDSKKSRYSSPDGVLAKTASFLSVLSDG--GYEDDVMNVK-PSVNVLSNRLNHL 172
Query: 237 -EQSIRSCY 214
+++ SC+
Sbjct: 173 PVEALESCF 181
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTTIIECL 182
+S L LI G +GCGK+T ++ L
Sbjct: 104 ESRLLLICGPSGCGKSTAVQVL 125
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 105 RILFDSPLTLILGQNGCGKTTIIECL 182
R L L++G GCGKTT+ + L
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTTVCQIL 1206
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 652 TLSSVHNPFLFFLNDLS 602
T+ S HNPF+FF+N LS
Sbjct: 2691 TVVSSHNPFVFFVNVLS 2707
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 132 LILGQNGCGKTTIIECLRYAITGQMPP 212
L+LG + GKTTI++CL ++ P
Sbjct: 20 LLLGLDNAGKTTILKCLLNEDVNEVSP 46
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 105 RILFDSPLTLILGQNGCGKTTIIECLRYA--ITGQMPPGSRNECFVHDAKVND 257
R+ S LI G GK+T+ L + + P + C VHDA++ND
Sbjct: 149 RVEDTSSKILITGDLNAGKSTLCNALVHKDILPEDQQPCTEVFCEVHDAELND 201
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 132 LILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHD 242
L++G++ GK I+ A+TG +P G +E F +D
Sbjct: 5 LVIGRSNSGKLDFIK----ALTGSLPKGLDDEAFNND 37
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 102 QRILFDSPLTLILGQNGCGKTTIIECL 182
Q + LT ++G++G GKTT++ L
Sbjct: 905 QGFVVPGKLTALMGESGAGKTTLLNVL 931
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +1
Query: 484 SHTKFCRICHQEDSSWPLDEGKKVKERFDEIFDADK-------YSDCLDRLKKIRKDYAQ 642
S K + + + PL E KKV+E+ DK +D R + K Y +
Sbjct: 514 SEEKKLEVSDEAPKAAPLAESKKVEEKEPFYVSKDKKDISAVNLADLNKRFEGFEKRYEE 573
Query: 643 NLKLLEQEVAHLTEKKPDLDQ 705
L + + ++A L +K L +
Sbjct: 574 ELAIRDWKIAQLEDKLAKLTE 594
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 129 TLILGQNGCGKTTIIECL 182
TL++G NG GK+T+++ L
Sbjct: 33 TLLVGANGAGKSTLLKLL 50
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTT 167
D+ + ++LG+NG GKTT
Sbjct: 374 DAEIIVLLGENGTGKTT 390
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 190 AYLKHSIIVVLPHPFCPNISVNGESNSMRCSSVSSGP-KLLIPLIA 56
+Y SII + P ++ VN + N++ +SVS+G +L +P ++
Sbjct: 52 SYSSTSIIHSVSSPVDCSLDVNNQINTINITSVSAGTNELFLPTLS 97
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 610 RLKKIRKDYAQNLKLLEQEVAHLTEKK 690
R KK++K+YAQ KL ++ ++++ K
Sbjct: 727 RKKKLQKEYAQQEKLHKEYLSYIESNK 753
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 538 DEGKKVKERFDEIFDADKY 594
D G++V ER+ E+FD D Y
Sbjct: 140 DLGRQVFERYYELFDTDVY 158
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 580 DADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHL 678
D D Y C+ RL KDY N ++ ++E+ L
Sbjct: 416 DPDHYIACVTRLFAEYKDYIFNQEISQKEIIPL 448
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Frame = +1
Query: 547 KKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLE---QEV---AHLTEKKPDLDQE 708
+K +E +++ + +++D L+K+R+DY + L+ +E +E+ A + E +P E
Sbjct: 1056 RKTREDYEK--ELLRHADARSTLQKLREDYTKALEQVEDLNKEIALKAGINESQPFPISE 1113
Query: 709 KLNVVNSRVFFL 744
K + + V+ L
Sbjct: 1114 KEDPLRQEVYVL 1125
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 135 ILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHD 242
++G NG GK+T+I+ L TG++ P + E + H+
Sbjct: 705 VIGPNGAGKSTLIKVL----TGELLP-TVGEIYQHE 735
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 577 FDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQ-----EKLNVVNSRVFF 741
FD YS CL + + + L Q +HL+ K ++ EKL +++ RVF
Sbjct: 288 FDFSFYSPCLTKFPATIDYISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFI 347
Query: 742 L 744
L
Sbjct: 348 L 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,536
Number of Sequences: 5004
Number of extensions: 69839
Number of successful extensions: 296
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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