Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40069
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16) 79 5e-15
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0) 35 0.082
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 32 0.57
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.76
SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06) 31 0.76
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 30 2.3
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_53189| Best HMM Match : ABC_tran (HMM E-Value=0.021) 29 4.1
SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_47527| Best HMM Match : Alpha_E2_glycop (HMM E-Value=2.4) 29 4.1
SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 29 4.1
SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34) 29 4.1
SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_36538| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 7.1
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44) 28 9.4
SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 28 9.4
>SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)
Length = 488
Score = 78.6 bits (185), Expect = 5e-15
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ + + GIRS+ ++ I F PLTLI+G NG GKT++IECL+Y TG MPPG
Sbjct: 186 MSSIEKMQVCGIRSYSHQERCV--IEFQKPLTLIVGHNGAGKTSVIECLKYVTTGDMPPG 243
Query: 216 SRNECFVHDAKVNDQQK 266
S++ FVHD KV +Q+
Sbjct: 244 SKSS-FVHDPKVAGEQE 259
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 35.1 bits (77), Expect = 0.062
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 589 KYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKLNVVNSR 732
+Y D +DRL + K YA+N +LL+ + A L EK +L + + V R
Sbjct: 618 RYEDEIDRLNRKLKWYAENQQLLDHDAAALKEKDKELKELRETVSRLR 665
>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1636
Score = 34.7 bits (76), Expect = 0.082
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 111 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVHDAKVND 257
+++ +T +LG NG GKTT++ L TG PP S N V+ + D
Sbjct: 332 MYEGQITALLGHNGAGKTTLMSML----TGLFPPTSGN-AVVNGCSITD 375
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 547 KKVKERFDEIFDA---DKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKLN 717
KK+++ +++FD +K D ++ K + Q LEQ++ L EK+ ++EK
Sbjct: 303 KKMEQEMEQVFDIKVKEKKKKLKDSEAELGKKHEQMTNQLEQQLKELEEKRKKFEKEKKE 362
Query: 718 VVNSRV 735
+ R+
Sbjct: 363 YEDQRL 368
>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 884
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 111 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
+++ +T +LG NG GK+T+I A+TG + P S
Sbjct: 519 IYEGQITALLGHNGAGKSTLIG----ALTGMIQPSS 550
>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
Length = 240
Score = 31.5 bits (68), Expect = 0.76
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECL 182
+T +LG+NG GKTT+++CL
Sbjct: 111 VTCLLGRNGVGKTTLLKCL 129
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 87 EDTDEQR---ILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 227
+D D+ R ++ + P+ ++ G+ GCGKT ++ + + P S E
Sbjct: 441 DDADQLRAAHLIANMPVVVLSGKGGCGKTYVVSKVLSEANSHISPNSNQE 490
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDA-----DKYSDCLDRLKKIRKDYAQNLKLLEQEVA 672
C ++ DE K E D+++ KY L+ ++ K A ++LL+QE+A
Sbjct: 442 CEKQKIKGDYDEAVKALEAVDKVYSVREMALQKYKAELEEANQLLKKDASEIELLKQEIA 501
Query: 673 HL 678
L
Sbjct: 502 QL 503
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 227
DS + ++LG+NG GKTT I L G++ P + E
Sbjct: 344 DSEIIVMLGENGTGKTTFIRML----AGKLSPDNDEE 376
>SB_53189| Best HMM Match : ABC_tran (HMM E-Value=0.021)
Length = 127
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGSR-NECFVHDAKVNDQQKY 269
+T ++G +G GKTT + L +G+ G+R + F++ K +D KY
Sbjct: 19 VTAVMGPSGAGKTTFLNTL----SGKAYYGNRGGDIFINGVKESDFDKY 63
>SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 287 KIVNAKDKQLEVTRSMKVTALAKKK--TKFQTLDSFLSTVDESGK 415
+++N D++L V + + +A++K T FQT SF+ + GK
Sbjct: 645 RVINTPDRELGVKQFTSIRKVAEQKNMTMFQTTTSFILQIRLGGK 689
>SB_47527| Best HMM Match : Alpha_E2_glycop (HMM E-Value=2.4)
Length = 429
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 520 DSSWPL-DEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAH 675
D +W L + KK +E + + +DC D KK+ KD+ + E E+ H
Sbjct: 187 DMTWKLPSDAKKAFSEKEEPEETEMSADCTDTGKKLVKDFNFEREDTETELKH 239
>SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGSR-NECFVHDAKVNDQQKY 269
+T ++G +G GKTT + L +G+ G+R + F++ K +D KY
Sbjct: 343 VTAVMGPSGAGKTTFLNTL----SGKAYYGNRGGDIFINGVKESDFDKY 387
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 114 FDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECFVH 239
F P+ L++G+ GCGKTTI C +A Q S N C +H
Sbjct: 1202 FGEPV-LLVGETGCGKTTI--CQLFAALTQQNLFSVN-CHMH 1239
>SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34)
Length = 935
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 541 EGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQN 645
E KK KER E+F A+KYS LD + YA +
Sbjct: 397 EAKKWKERGKELFKANKYS-LLDEYYSLALSYAHH 430
>SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 538 DEGKKVKERFDEIFDADKY-SDCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKL 714
+E K++ + FDE + + + L L +++K +LLEQ+ L ++ PD+ EK+
Sbjct: 110 EERKRLTDEFDEACEMTREGTPALSLLDEMKKCLQSAEQLLEQDTETLVDQAPDM-LEKI 168
Query: 715 NVVN 726
N
Sbjct: 169 YTYN 172
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +1
Query: 607 DRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKLNVVNSRVFFLPN 750
D+L+ IR+ LKLL+QE++ L++K +L+++ + + R+ L N
Sbjct: 13 DKLRSIRR----RLKLLKQEISELSKKNYELERD-VKFFDQRIALLIN 55
>SB_36538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 142 PNISVNGESNSMRCSSVSSGPKLLIPLIASDFTPAILYVRFSYGLT 5
PN+ + C SV + L PL+ S AIL RF LT
Sbjct: 44 PNVQYHDTRKYRSCLSVEAAKSHLAPLLGSPSGSAILEDRFDISLT 89
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 377 LDSFLSTVDESGKTKDVSSRCADLDILMHEELGVSKAILNSV 502
L S + D K K + CA +++ +H+ SKA+L S+
Sbjct: 771 LKSIYTVEDAISKIKSAQAMCASVNLRLHKFSSNSKAVLESL 812
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTTIIECL 182
D L ++GQ GCGK+T++ L
Sbjct: 573 DGSLVAVVGQVGCGKSTLLSAL 594
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 604 LDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEKL 714
LD L+K Y N+K LE+ L E+ DL+ E L
Sbjct: 3062 LDDLRKQITGYQGNIKSLEENSNRLQERIKDLEDENL 3098
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 598 DCLDRLKKIRKDYAQNLKLLEQEVAHLTEKKPDLDQEK 711
D L +++DY Q + L++E+A L + + +L++++
Sbjct: 18 DALSEYDSLKRDYDQAMAQLQEEIAALDKMQAELEKKR 55
>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
Length = 945
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 111 LFDSPLTLILGQNGCGKTTIIECLRYAITGQMPP 212
L++ + LG NG GKTT + L TG PP
Sbjct: 525 LYEGQIMSFLGHNGAGKTTTMSIL----TGLFPP 554
>SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 781
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGSR-NECFVHDAKVNDQQKY 269
+T ++G +G GKTT + L +G+ G+R E F++ K +D Y
Sbjct: 225 VTAVMGPSGAGKTTFLNTL----SGKAYYGTRGGEIFINGKKEDDLDMY 269
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,137,594
Number of Sequences: 59808
Number of extensions: 479633
Number of successful extensions: 1418
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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