Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40069
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein. 96 1e-19
BC140005-1|AAI40006.1| 110|Homo sapiens RAD50 protein protein. 96 1e-19
BC108282-1|AAI08283.1| 723|Homo sapiens RAD50 protein protein. 96 1e-19
BC073850-1|AAH73850.1| 723|Homo sapiens RAD50 protein protein. 96 1e-19
BC062603-1|AAH62603.1| 557|Homo sapiens RAD50 protein protein. 96 1e-19
AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein. 96 1e-19
Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50 p... 93 1e-18
AF057300-1|AAD50326.1| 1173|Homo sapiens truncated RAD50 protein... 70 8e-12
X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein. 34 0.63
U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein. 34 0.63
DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette, s... 34 0.63
AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein p... 34 0.63
AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane ... 34 0.63
BC011707-1|AAH11707.1| 287|Homo sapiens nuclear receptor bindin... 33 1.5
AY267840-1|AAP03082.1| 287|Homo sapiens comodulator of PPAR and... 33 1.5
AY267839-1|AAP03081.1| 237|Homo sapiens comodulator of PPAR and... 33 1.5
AL590502-2|CAO03491.1| 287|Homo sapiens nuclear receptor bindin... 33 1.5
AL136656-1|CAB66591.1| 287|Homo sapiens hypothetical protein pr... 33 1.5
AK054957-1|BAB70833.1| 287|Homo sapiens protein ( Homo sapiens ... 33 1.5
AF267866-1|AAG44735.1| 277|Homo sapiens hNRBF-2 protein. 33 1.5
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p... 32 1.9
Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein. 32 2.5
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran... 32 2.5
BC037946-1|AAH37946.1| 238|Homo sapiens HELB protein protein. 32 2.5
AK024464-1|BAB15754.1| 575|Homo sapiens FLJ00057 protein protein. 32 2.5
AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein. 32 2.5
AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter pro... 32 2.5
AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette tr... 32 2.5
AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein. 31 4.5
AK131360-1|BAD18512.1| 1186|Homo sapiens mRNA. protein. 31 4.5
AK128570-1|BAC87504.1| 851|Homo sapiens protein ( Homo sapiens ... 31 4.5
AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette tr... 31 4.5
U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated pro... 31 5.9
BC045554-1|AAH45554.2| 498|Homo sapiens PDXDC1 protein protein. 31 5.9
AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein comp... 31 5.9
Y09048-1|CAA70257.1| 299|Homo sapiens PxF protein protein. 30 7.8
X75535-1|CAA53225.1| 299|Homo sapiens house keeping gene 33 pro... 30 7.8
BT006879-1|AAP35525.1| 299|Homo sapiens peroxisomal farnesylate... 30 7.8
BC000496-1|AAH00496.1| 299|Homo sapiens peroxisomal biogenesis ... 30 7.8
AL513282-5|CAI12457.1| 299|Homo sapiens peroxisomal biogenesis ... 30 7.8
AL513282-4|CAI12456.1| 235|Homo sapiens peroxisomal biogenesis ... 30 7.8
AB062286-1|BAB93469.1| 209|Homo sapiens peroxisomal farnesylate... 30 7.8
AB018541-1|BAA76291.1| 299|Homo sapiens PEX19 protein. 30 7.8
>U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein.
Length = 1312
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 216 SRNECFVHDAKVNDQQKYSVK*N*RLSMQKTN 311
++ FVHD KV Q+ V+ RL + N
Sbjct: 61 TKGNTFVHDPKV--AQETDVRAQIRLQFRDVN 90
Score = 70.1 bits (164), Expect = 8e-12
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q +K + E+ +L +
Sbjct: 157 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQY 216
Query: 688 K 690
K
Sbjct: 217 K 217
Score = 61.3 bits (142), Expect = 4e-09
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T+V Q++L+ + + + V RSM T +KK T+F+TL+ + T + G+ +SS+C
Sbjct: 76 TDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK-TEFKTLEGVI-TRTKHGEKVSLSSKC 133
Query: 440 ADLDILMHEELGVSKAILNSVVFATKK-----IQAGHSMKEK 550
A++D M LGVSKA+LN+V+F ++ + G ++K+K
Sbjct: 134 AEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQK 175
>BC140005-1|AAI40006.1| 110|Homo sapiens RAD50 protein protein.
Length = 110
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 216 SRNECFVHDAKVNDQQKYSVK*N*RLSMQKTN 311
++ FVHD KV Q+ V+ RL + N
Sbjct: 61 TKGNTFVHDPKV--AQETDVRAQIRLQFRDVN 90
>BC108282-1|AAI08283.1| 723|Homo sapiens RAD50 protein protein.
Length = 723
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 216 SRNECFVHDAKVNDQQKYSVK*N*RLSMQKTN 311
++ FVHD KV Q+ V+ RL + N
Sbjct: 61 TKGNTFVHDPKV--AQETDVRAQIRLQFRDVN 90
Score = 70.1 bits (164), Expect = 8e-12
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q +K + E+ +L +
Sbjct: 157 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQY 216
Query: 688 K 690
K
Sbjct: 217 K 217
Score = 61.3 bits (142), Expect = 4e-09
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T+V Q++L+ + + + V RSM T +KK T+F+TL+ + T + G+ +SS+C
Sbjct: 76 TDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK-TEFKTLEGVI-TRTKHGEKVSLSSKC 133
Query: 440 ADLDILMHEELGVSKAILNSVVFATKK-----IQAGHSMKEK 550
A++D M LGVSKA+LN+V+F ++ + G ++K+K
Sbjct: 134 AEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQK 175
>BC073850-1|AAH73850.1| 723|Homo sapiens RAD50 protein protein.
Length = 723
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 216 SRNECFVHDAKVNDQQKYSVK*N*RLSMQKTN 311
++ FVHD KV Q+ V+ RL + N
Sbjct: 61 TKGNTFVHDPKV--AQETDVRAQIRLQFRDVN 90
Score = 70.1 bits (164), Expect = 8e-12
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q +K + E+ +L +
Sbjct: 157 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQY 216
Query: 688 K 690
K
Sbjct: 217 K 217
Score = 61.3 bits (142), Expect = 4e-09
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T+V Q++L+ + + + V RSM T +KK T+F+TL+ + T + G+ +SS+C
Sbjct: 76 TDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK-TEFKTLEGVI-TRTKHGEKVSLSSKC 133
Query: 440 ADLDILMHEELGVSKAILNSVVFATKK-----IQAGHSMKEK 550
A++D M LGVSKA+LN+V+F ++ + G ++K+K
Sbjct: 134 AEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQK 175
>BC062603-1|AAH62603.1| 557|Homo sapiens RAD50 protein protein.
Length = 557
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 216 SRNECFVHDAKVNDQQKYSVK*N*RLSMQKTN 311
++ FVHD KV Q+ V+ RL + N
Sbjct: 61 TKGNTFVHDPKV--AQETDVRAQIRLQFRDVN 90
Score = 70.1 bits (164), Expect = 8e-12
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q +K + E+ +L +
Sbjct: 157 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQY 216
Query: 688 K 690
K
Sbjct: 217 K 217
Score = 61.3 bits (142), Expect = 4e-09
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T+V Q++L+ + + + V RSM T +KK T+F+TL+ + T + G+ +SS+C
Sbjct: 76 TDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK-TEFKTLEGVI-TRTKHGEKVSLSSKC 133
Query: 440 ADLDILMHEELGVSKAILNSVVFATKK-----IQAGHSMKEK 550
A++D M LGVSKA+LN+V+F ++ + G ++K+K
Sbjct: 134 AEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQK 175
>AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein.
Length = 1312
Score = 96.3 bits (229), Expect = 1e-19
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ ++ ++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG
Sbjct: 1 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG 60
Query: 216 SRNECFVHDAKVNDQQKYSVK*N*RLSMQKTN 311
++ FVHD KV Q+ V+ RL + N
Sbjct: 61 TKGNTFVHDPKV--AQETDVRAQIRLQFRDVN 90
Score = 70.1 bits (164), Expect = 8e-12
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q +K + E+ +L +
Sbjct: 157 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQY 216
Query: 688 K 690
K
Sbjct: 217 K 217
Score = 61.3 bits (142), Expect = 4e-09
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T+V Q++L+ + + + V RSM T +KK T+F+TL+ + T + G+ +SS+C
Sbjct: 76 TDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK-TEFKTLEGVI-TRTKHGEKVSLSSKC 133
Query: 440 ADLDILMHEELGVSKAILNSVVFATKK-----IQAGHSMKEK 550
A++D M LGVSKA+LN+V+F ++ + G ++K+K
Sbjct: 134 AEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQK 175
>Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50
protein.
Length = 1318
Score = 93.1 bits (221), Expect = 1e-18
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +3
Query: 54 LAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNECF 233
++I G+RSFG ED D+Q I F SPLT+++G NG GKTTIIECL+Y TG PPG++ F
Sbjct: 13 MSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTF 72
Query: 234 VHDAKVNDQQKYSVK*N*RLSMQKTN 311
VHD KV Q+ V+ RL + N
Sbjct: 73 VHDPKV--AQETDVRAQIRLQFRDVN 96
Score = 68.5 bits (160), Expect = 2e-11
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q ++ + E+ +L +
Sbjct: 163 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVEEYQMELKYLKQY 222
Query: 688 K 690
K
Sbjct: 223 K 223
Score = 61.3 bits (142), Expect = 4e-09
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +2
Query: 260 TEVLGQVKLKIVNAKDKQLEVTRSMKVTALAKKKTKFQTLDSFLSTVDESGKTKDVSSRC 439
T+V Q++L+ + + + V RSM T +KK T+F+TL+ + T + G+ +SS+C
Sbjct: 82 TDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKK-TEFKTLEGVI-TRTKHGEKVSLSSKC 139
Query: 440 ADLDILMHEELGVSKAILNSVVFATKK-----IQAGHSMKEK 550
A++D M LGVSKA+LN+V+F ++ + G ++K+K
Sbjct: 140 AEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQK 181
>AF057300-1|AAD50326.1| 1173|Homo sapiens truncated RAD50 protein
protein.
Length = 1173
Score = 70.1 bits (164), Expect = 8e-12
Identities = 28/61 (45%), Positives = 43/61 (70%)
Frame = +1
Query: 508 CHQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEK 687
CHQEDS+WPL EGK +K++FDEIF A +Y L+ L+++R+ Q +K + E+ +L +
Sbjct: 18 CHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQY 77
Query: 688 K 690
K
Sbjct: 78 K 78
>X97187-1|CAA65825.1| 1704|Homo sapiens ABC-C transporter protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.63
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 203
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 204 MPPGS 218
PP S
Sbjct: 583 FPPTS 587
>U78735-1|AAC50967.1| 1704|Homo sapiens ABC3 protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.63
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 203
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 204 MPPGS 218
PP S
Sbjct: 583 FPPTS 587
>DQ073080-1|AAY57325.1| 1704|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), member 3 protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.63
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 203
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 204 MPPGS 218
PP S
Sbjct: 583 FPPTS 587
>AB210044-1|BAE06126.1| 1708|Homo sapiens ABCA3 variant protein
protein.
Length = 1708
Score = 33.9 bits (74), Expect = 0.63
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 203
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 531 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 586
Query: 204 MPPGS 218
PP S
Sbjct: 587 FPPTS 591
>AB070929-1|BAB86781.1| 1704|Homo sapiens lamellar body membrane
specific ATP-binding cassette protein protein.
Length = 1704
Score = 33.9 bits (74), Expect = 0.63
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDT----DEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQ 203
+AG+K + + G +D D L++ +T++LG NG GKTT + L TG
Sbjct: 527 VAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSML----TGL 582
Query: 204 MPPGS 218
PP S
Sbjct: 583 FPPTS 587
>BC011707-1|AAH11707.1| 287|Homo sapiens nuclear receptor binding
factor 2 protein.
Length = 287
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AY267840-1|AAP03082.1| 287|Homo sapiens comodulator of PPAR and
RXR 2 protein.
Length = 287
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AY267839-1|AAP03081.1| 237|Homo sapiens comodulator of PPAR and
RXR 1 protein.
Length = 237
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AL590502-2|CAO03491.1| 287|Homo sapiens nuclear receptor binding
factor-2 protein.
Length = 287
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AL136656-1|CAB66591.1| 287|Homo sapiens hypothetical protein
protein.
Length = 287
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AK054957-1|BAB70833.1| 287|Homo sapiens protein ( Homo sapiens
cDNA FLJ30395 fis, clone BRACE2008385, highly similar to
Rattus norvegicus NRBF-2 mRNA for nuclear receptor
binding ).
Length = 287
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AF267866-1|AAG44735.1| 277|Homo sapiens hNRBF-2 protein.
Length = 277
Score = 32.7 bits (71), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 532 PLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLT-EKKPDLDQE 708
PL+ + R D + A KY + + KK ++ +KL + E AHL+ E + D +
Sbjct: 7 PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMK 66
Query: 709 KLNVVNSR 732
+L ++ R
Sbjct: 67 QLLLIQER 74
>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
protein.
Length = 2303
Score = 32.3 bits (70), Expect = 1.9
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 961 VKNL-VKIFEPCGQPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 1014
>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
Length = 2273
Score = 31.9 bits (69), Expect = 2.5
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 31.9 bits (69), Expect = 2.5
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>BC037946-1|AAH37946.1| 238|Homo sapiens HELB protein protein.
Length = 238
Score = 31.9 bits (69), Expect = 2.5
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ILFDSPLTLILGQNGCGKTTIIECL 182
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 177 MICSNPVTVISGKGGCGKTTIVSRL 201
>AK024464-1|BAB15754.1| 575|Homo sapiens FLJ00057 protein protein.
Length = 575
Score = 31.9 bits (69), Expect = 2.5
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ILFDSPLTLILGQNGCGKTTIIECL 182
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 465 MICSNPVTVISGKGGCGKTTIVSRL 489
>AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.
Length = 1087
Score = 31.9 bits (69), Expect = 2.5
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ILFDSPLTLILGQNGCGKTTIIECL 182
++ +P+T+I G+ GCGKTTI+ L
Sbjct: 464 MICSNPVTVISGKGGCGKTTIVSRL 488
>AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter protein.
Length = 2273
Score = 31.9 bits (69), Expect = 2.5
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 31.9 bits (69), Expect = 2.5
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 VKSLAIRGIRSFGPEDTDEQRILF-DSPLTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
VK+L ++ G D I F ++ +T LG NG GKTT + L TG +PP S
Sbjct: 931 VKNL-VKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS 984
>AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein.
Length = 5058
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
+T +LG NG GKTTII L TG PP S
Sbjct: 3870 ITALLGTNGAGKTTIISML----TGLHPPTS 3896
>AK131360-1|BAD18512.1| 1186|Homo sapiens mRNA. protein.
Length = 1186
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
+T +LG NG GKTTII L TG PP S
Sbjct: 130 ITALLGTNGAGKTTIISML----TGLHPPTS 156
>AK128570-1|BAC87504.1| 851|Homo sapiens protein ( Homo sapiens
cDNA FLJ46729 fis, clone TRACH3019370, weakly similar
to ATP-binding cassette, sub-family A, member 1. ).
Length = 851
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
+T +LG NG GKTTII L TG PP S
Sbjct: 625 ITALLGTNGAGKTTIISML----TGLHPPTS 651
>AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette
transporter A13 protein.
Length = 2127
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
+T +LG NG GKTTII L TG PP S
Sbjct: 938 ITALLGTNGAGKTTIISML----TGLHPPTS 964
>U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated protein
TP-1 protein.
Length = 2627
Score = 30.7 bits (66), Expect = 5.9
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 87 EDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSR 221
+DT +Q +L L+L+ GQ+G GKT + L A+ Q P G++
Sbjct: 1150 QDTVQQLMLPHGRLSLVTGQSGQGKTAFLASLVSAL--QAPDGAK 1192
>BC045554-1|AAH45554.2| 498|Homo sapiens PDXDC1 protein protein.
Length = 498
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 120 SPLTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 227
SPL G + CG TT +C+R +T ++ PGS E
Sbjct: 460 SPLMTAAGWSHCGTTTRYDCVRSRLTTRL-PGSTGE 494
>AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein
component 1 variant protein.
Length = 1903
Score = 30.7 bits (66), Expect = 5.9
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 87 EDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPGSR 221
+DT +Q +L L+L+ GQ+G GKT + L A+ Q P G++
Sbjct: 499 QDTVQQLMLPHGRLSLVTGQSGQGKTAFLASLVSAL--QAPDGAK 541
>Y09048-1|CAA70257.1| 299|Homo sapiens PxF protein protein.
Length = 299
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 220 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 253
>X75535-1|CAA53225.1| 299|Homo sapiens house keeping gene 33
protein.
Length = 299
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 220 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 253
>BT006879-1|AAP35525.1| 299|Homo sapiens peroxisomal farnesylated
protein protein.
Length = 299
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 220 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 253
>BC000496-1|AAH00496.1| 299|Homo sapiens peroxisomal biogenesis
factor 19 protein.
Length = 299
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 220 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 253
>AL513282-5|CAI12457.1| 299|Homo sapiens peroxisomal biogenesis
factor 19 protein.
Length = 299
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 220 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 253
>AL513282-4|CAI12456.1| 235|Homo sapiens peroxisomal biogenesis
factor 19 protein.
Length = 235
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 200 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 233
>AB062286-1|BAB93469.1| 209|Homo sapiens peroxisomal farnesylated
protein protein.
Length = 209
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 130 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 163
>AB018541-1|BAA76291.1| 299|Homo sapiens PEX19 protein.
Length = 299
Score = 30.3 bits (65), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 481 KSHTKFCRICHQEDSSWPLDEGKKVKERFDEIFD 582
+ H+ C+IC Q ++ P D K RF+ + D
Sbjct: 220 EQHSVMCKICEQFEAETPTDSETTQKARFEMVLD 253
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,140,811
Number of Sequences: 237096
Number of extensions: 2390943
Number of successful extensions: 10886
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 10467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10886
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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