Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40068
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    89   1e-19
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    25   1.9  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   2.6  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   3.4  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   3.4  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   4.5  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   4.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   4.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    23   5.9  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    23   7.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   7.8  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    23   7.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   7.8  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 88.6 bits (210), Expect = 1e-19
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +2

Query: 86  RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRVCS*HRIQEAGL 214
           +T +S +  LL+ A  +N  PQ+RFEH +  L+RV   +  ++A L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 62  LVFSPSQIRTRISVMPI 112
           LV+ PSQIR R+S++ +
Sbjct: 26  LVYRPSQIRRRVSLLSL 42


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 106 HDRDPCPYL 80
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 87  GQGSRSCRSCSNRHGLIRKYGLNICRQC 170
           G GS    +  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 86  RTRISVMPILLQQAW 130
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 178 SLKHCLHMFKPYLRIKP 128
           S+K C     PYL +KP
Sbjct: 54  SMKRCRETIAPYLELKP 70


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 14   SLARNNLIS*NGPRKYLVFSPSQIRTRISVMPILLQQAWLNP 139
            SLAR +++   GP K L F    + T   V   L + + ++P
Sbjct: 918  SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 139 RIKPCLLEQDRHDRDPCPYLRG*EYQI 59
           R  P LLE  ++  D CP  +G  YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 114 RIGMTEILVRICEGENTKYL 55
           +IG+ + L+  CEG   KYL
Sbjct: 283 KIGVIKRLLSSCEGAEPKYL 302


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 84   YGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 179
            Y + S  CRSC NR    + Y     +  F+E
Sbjct: 1163 YKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 71  RIPNICVAHFKKLNCFSLTSNKL 3
           R PNI   HFK+       S+K+
Sbjct: 324 RAPNILTIHFKRFTFNGFQSSKI 346


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 163  LHMFKPYLRIKPCLLEQ 113
            LH+ KPYLR    + EQ
Sbjct: 1039 LHLLKPYLRSASTIEEQ 1055


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,746
Number of Sequences: 5004
Number of extensions: 18547
Number of successful extensions: 47
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)