Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40067
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    81   3e-16
06_03_1078 + 27418886-27419215                                         28   4.0  
01_06_1411 + 37127098-37128279                                         28   4.0  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   7.1  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    27   9.3  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     27   9.3  
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342...    27   9.3  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/65 (56%), Positives = 50/65 (76%)
 Frame = +2

Query: 29  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 208
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 209 NIGSG 223
           ++GSG
Sbjct: 61  SVGSG 65


>06_03_1078 + 27418886-27419215
          Length = 109

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 154 ARSVRQSLGRHQCP*PDHQHRLWSGCCSGRWW 249
           +RS R   G  + P P H  R+W+G   G WW
Sbjct: 29  SRSNRAPSGAFRPPDPRHPGRIWTG---GGWW 57


>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -2

Query: 251 LHQRPEQHPLQSRCW*SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQLRQH 84
           LH R  Q P+  R     H H  L       L    LHL P L R  +  H+LR+H
Sbjct: 96  LHLRHHQFPVYRRGHHPDHDHDPLLH----PLPRQELHLDPSLRRALRSWHRLRRH 147


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 101 HQLRQHHHPPG*EQSKH 51
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +2

Query: 2   QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 181
           Q A   LK   K  +AC    L+LV DD   T     T+ KA A D+     G   +AL 
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712

Query: 182 GI 187
            +
Sbjct: 713 SV 714


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109 FHHLESGGCRCRAILARSVRQSLGRHQCP*PDHQHRLWSGCCSGRW-WS 252
           FHH + G C CR    +  ++   R +   P   + +WS   S  W WS
Sbjct: 692 FHHFKDGFCSCRDYWIQVSKRPFDR-EVHHPLQANCIWSIVLSRSWVWS 739


>01_06_1007 -
           33733500-33733604,33733837-33733917,33734191-33734238,
           33734364-33734549,33735148-33735678,33735823-33735864,
           33735945-33736065,33736200-33736281,33737169-33737227,
           33738492-33738564,33738694-33738913
          Length = 515

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 159 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 248
           VC  +P         SP  +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,917
Number of Sequences: 37544
Number of extensions: 196587
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)