Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40067
(453 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosom... 124 4e-29
AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p pro... 124 4e-29
AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA ... 124 4e-29
Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein ( Dros... 118 4e-27
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 29 2.9
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 29 3.9
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 28 6.8
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 28 6.8
AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p pro... 27 8.9
AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA... 27 8.9
AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,... 27 8.9
>S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosomal
protein rpA2 protein.
Length = 112
Score = 124 bits (300), Expect = 4e-29
Identities = 59/67 (88%), Positives = 65/67 (97%)
Frame = +2
Query: 26 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 205
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 206 TNIGSGV 226
TNIGSGV
Sbjct: 61 TNIGSGV 67
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 328 SDDDMGFGLFD 360
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p
protein.
Length = 112
Score = 124 bits (300), Expect = 4e-29
Identities = 59/67 (88%), Positives = 65/67 (97%)
Frame = +2
Query: 26 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 205
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 206 TNIGSGV 226
TNIGSGV
Sbjct: 61 TNIGSGV 67
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 328 SDDDMGFGLFD 360
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA
protein.
Length = 112
Score = 124 bits (300), Expect = 4e-29
Identities = 59/67 (88%), Positives = 65/67 (97%)
Frame = +2
Query: 26 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 205
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 206 TNIGSGV 226
TNIGSGV
Sbjct: 61 TNIGSGV 67
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 328 SDDDMGFGLFD 360
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein (
Drosophila melanogastermRNA for A-type ribosomal protein
rp21C. ).
Length = 112
Score = 118 bits (284), Expect = 4e-27
Identities = 57/67 (85%), Positives = 63/67 (94%)
Frame = +2
Query: 26 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 205
M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLI
Sbjct: 1 MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLI 60
Query: 206 TNIGSGV 226
TNIGSGV
Sbjct: 61 TNIGSGV 67
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 328 SDDDMGFGLFD 360
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 207 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI 106
+I S+ L+P+K N P QY T+ A K +I
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKI 288
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 198 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 70
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 198 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 70
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 198 SRTLMPSKALANRPGQYGSTSTAAAFKMVEI 106
S+ L+P+K N P QY T+ A K +I
Sbjct: 258 SQNLVPAKTHINTPTQYNDTNATNALKTAKI 288
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 198 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 70
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 198 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 70
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375
>AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p protein.
Length = 1712
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 164 TDLANMALHLQPPLSRWWKFSHQLRQHHH 78
+ ++N +L+L+ P K H R+HHH
Sbjct: 969 SSISNQSLNLEEPPPPMGKHHHHHREHHH 997
>AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA
protein.
Length = 1712
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 164 TDLANMALHLQPPLSRWWKFSHQLRQHHH 78
+ ++N +L+L+ P K H R+HHH
Sbjct: 969 SSISNQSLNLEEPPPPMGKHHHHHREHHH 997
>AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,
isoform B protein.
Length = 2833
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 155 ANMALHLQPPLSRWWKFSHQLRQHHH 78
AN A+H P H+ RQHHH
Sbjct: 1835 ANPAMHFVSPFKSLENLLHEDRQHHH 1860
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,116
Number of Sequences: 53049
Number of extensions: 315864
Number of successful extensions: 953
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -