Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40065
         (866 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   4.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   4.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   4.1  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   7.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.5  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 402 RKFKHLWLSVVSTFSMQPMKPGYPWMFNQLGIP 304
           R  +H+  ++ S    QP+ P Y WM  +  +P
Sbjct: 175 RMRQHVMHNLSSVPQPQPVLPTYKWMQVKRNVP 207


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 402 RKFKHLWLSVVSTFSMQPMKPGYPWMFNQLGIP 304
           R  +H+  ++ S    QP+ P Y WM  +  +P
Sbjct: 175 RMRQHVMHNLSSVPQPQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 402 RKFKHLWLSVVSTFSMQPMKPGYPWMFNQLGIP 304
           R  +H+  ++ S    QP+ P Y WM  +  +P
Sbjct: 175 RMRQHVMHNLSSVPQPQPVLPTYKWMQVKRNVP 207


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 259 RYLQRHER*LQHIHRWNTKLVEHPRISRLHR 351
           ++   HE  LQH+H+      E  ++  LH+
Sbjct: 102 KFNPHHEIKLQHLHQSKFNPHEEVKLQHLHQ 132


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 128 AQVPFEYDETSFNS 87
           AQVP++YD T++ S
Sbjct: 302 AQVPYKYDGTNWVS 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,883
Number of Sequences: 336
Number of extensions: 3755
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)