Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40065
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710...    30   2.1  
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386     30   2.8  
05_03_0061 + 7912322-7912658,7914617-7914747,7914875-7914938,791...    29   3.6  
02_01_0748 + 5566073-5567620                                           29   3.6  
10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055           29   6.4  
04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496     28   8.4  

>01_01_0903 -
           7103091-7103120,7104092-7104651,7105208-7105328,
           7105545-7106567
          Length = 577

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 235 PSTESQACPS--SCRRAATWCLSPSLIGTST 149
           PSTE  A PS  SC+    W   PS+ G ST
Sbjct: 355 PSTEHSATPSDESCQSVVDWDTEPSIDGVST 385


>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
          Length = 837

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 256 GGALLSTPSTESQA-CPSSC 200
           GG LLS PS +S A CPSSC
Sbjct: 33  GGGLLSIPSNDSLAHCPSSC 52


>05_03_0061 +
           7912322-7912658,7914617-7914747,7914875-7914938,
           7915286-7915512,7915869-7916396,7916860-7916919
          Length = 448

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 99  GFVVLEWDLGGGLSSIVVDVPINDGERHQVAARLHEDGHAWLSVD 233
           G  V   DL  G+++ VV    +DG+  +VAA  H +  AW  V+
Sbjct: 32  GTAVANMDLVRGMATSVVLATGSDGDNDEVAACGHGEDDAWNGVE 76


>02_01_0748 + 5566073-5567620
          Length = 515

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 15  TNDGVLAYQREGQAPPNEGDYFLLRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQVAA 194
           T   +LA+  E      +G YFL      F V     GGG     V  P+N  +R +VAA
Sbjct: 60  TGRALLAWLSELVDGALQGRYFL----DAFPVATDHDGGGRGEAAVANPLNPAKRLRVAA 115

Query: 195 R--LHEDGHAWLSVDGV 239
           R  +  DG A   +DGV
Sbjct: 116 RRLVFWDGGAAAELDGV 132


>10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055
          Length = 447

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 489 LNYFVVFVSMNSNQESLHSCVFRPATAVSRKFKHLWLSVVSTFSMQPMKPGYP 331
           L +F+  +S N++ E L         +  R  KH + SVV + S + +KP  P
Sbjct: 99  LAFFLYMLSHNASFEDLQEKFGHSGDSFHRHVKHFFNSVVPSLSKRFLKPPNP 151


>04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496
          Length = 321

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 316 AWYSTDVYVGVSVHDVGDTGGGALLSTPSTESQACPSSCRRAATW 182
           A Y T  Y   +V   G  GGG   S     S + PS+C     W
Sbjct: 227 ASYRTYAYSACAVPAAGGGGGGPCTSGQLPNSTSSPSTCDCGGAW 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,449,367
Number of Sequences: 37544
Number of extensions: 416537
Number of successful extensions: 1115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)