Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40065
(866 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 44 2e-04
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 36 0.032
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 34 0.13
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 32 0.53
SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 31 1.2
SB_8704| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25) 30 2.1
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 29 3.7
SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_7717| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +3
Query: 72 DYFLLRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQVAARLHEDGHAWLSVD 233
DY +L I +GF+ L +D G G+ SI P+NDG+ H VA + HA +++D
Sbjct: 1820 DYSILEISKGFIQLRFDFGPGVVSIDWS-PVNDGKWHHVAVE-RQGNHATVTLD 1871
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 36.3 bits (80), Expect = 0.032
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 18 NDGVLAYQREGQAPPNEGDYFLLRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQVAA- 194
+DG+L Y + + PN GD+ + I G V +DLG G + I I G+ H V A
Sbjct: 283 SDGLLLYNGQ-RLHPNRGDFVSIAIVGGNVEFRYDLGYGRAVIRSKKNITVGQWHTVVAE 341
Query: 195 RLHEDG 212
R DG
Sbjct: 342 RYRRDG 347
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 35.1 bits (77), Expect = 0.075
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 24 GVLAYQREGQAPPNEGDYFLLRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQV 188
G+L Y + PN +Y ++ + G V L DLG G S++ + +NDG+ H +
Sbjct: 1538 GLLLYAGWKPSGPNT-EYLMVDLVSGKVRLTADLGSGPGSVINPMTVNDGDWHHI 1591
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 18 NDGVLAYQREGQAPPNEGDYFLLRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQVAAR 197
+DG+L YQ ++ + D+ L + RG + L + G + +ND HQV
Sbjct: 1057 SDGLLLYQGADRSLEHP-DHVALELLRGSLRLSLNTGFDTQVDTIGRDLNDSTYHQVTLV 1115
Query: 198 LHEDGHAWLSVDG 236
L E+ A + V G
Sbjct: 1116 L-ENNRATVEVSG 1127
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 257 TGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 367
TG S V S +YIGG S G P F GCI+NV
Sbjct: 829 TGPSFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 865
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +2
Query: 260 GISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 367
G S V S +YIGG S G P F GCI+NV
Sbjct: 142 GPSFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 177
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 32.3 bits (70), Expect = 0.53
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 290 NIYIGGIPSWLNIHGY-PGFIGCIENV 367
++YIGG P + G PGFIGCI N+
Sbjct: 996 SLYIGGEPGGMREDGSNPGFIGCIRNI 1022
>SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 266 SNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 367
S V S +YIGG S G P F GCI+NV
Sbjct: 3 SFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 36
>SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 490
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 217 PGSPSTELTRARRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
PG+ LTR HRY ++H + IHR+ K + P RI R R H
Sbjct: 198 PGNMQRYLTRI--HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 243
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 221 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 257
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 235 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 271
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 249 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 285
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 263 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 299
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 277 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 313
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 291 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 327
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 361 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 397
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 375 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 411
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 389 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 425
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 403 RIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 439
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 250 RRHRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 357
R HRY ++H + IHR+ K + P RI R R H
Sbjct: 431 RIHRYTRKHAKIPTQIHRYTRKHAKIPTRIHRYTRKH 467
>SB_8704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 166 TTARGTRSPLVCTRTDTPGSPSTELT---RARRHRYLQRHER 282
T + T+ PL+ T GSPST+ T RAR+ ++ H +
Sbjct: 34 TGSPSTQRPLISEHAKTTGSPSTQRTLDLRARKEHWISEHAK 75
>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
Length = 614
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 72 DYFLLRIERGFVVLEWDLGGGLSSIVVD-VPINDGERHQV 188
DY + I+ G V + DLG G S + + + ++DGE H V
Sbjct: 484 DYIYIGIKYGKVFYDSDLGTGRSKVYAEGIRVDDGEWHSV 523
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 18 NDGVLAYQREGQAPPNEGDYFLLRIERGFVVLEWDLGGGLSSI 146
ND +L Y + + GD+ L ++ G ++L+++LG GL+ I
Sbjct: 810 NDALLLYSSQDRYLGG-GDFIALGLKDGQILLQYNLGSGLARI 851
>SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 28.7 bits (61), Expect = 6.5
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 24 GVLAYQREGQAPPNEGDYFLLRIERGFVV-LEWDLGGGLSSIVVDV---PINDGER-HQV 188
G+L +Q G+ N D+ + I V L +D+G G SIVV V P+N H+V
Sbjct: 672 GILFHQ--GEKTRNTRDFIQVNITSNDTVQLSYDIGNGPQSIVVQVTENPLNTNRLWHKV 729
Query: 189 AA--RLHEDGHAWLSVDGVDK 245
+ E G L VDG+ K
Sbjct: 730 VVWFNIKEFG---LEVDGIRK 747
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +3
Query: 51 QAPPNEGDYFLLRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQV 188
Q+ + ++ +R+E G++ + + GG ++ V +N+GE + V
Sbjct: 1507 QSRQDASNFLEVRLESGYLNVTYAFGGNTGTVKTGVVVNNGEWYHV 1552
>SB_7717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 214 TPGSPSTELTRARRHRYLQRHER*LQHIHRWNTKLVEHPRISRLHRLH*ER*DNGQPQML 393
TP T+ T R H L H +HR +T L+ H + LHR H P
Sbjct: 15 TPMPHYTDATLHRCHTTLMPHYTDAT-LHRCHTTLMPHYTDATLHRCH----TTPMPHYT 69
Query: 394 EFARHRC 414
+ HRC
Sbjct: 70 DATLHRC 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,829,999
Number of Sequences: 59808
Number of extensions: 490992
Number of successful extensions: 1085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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